SCOPe 2.08: Domain d6ygxa_: 6ygx A:

Lineage for d6ygxa_ (6ygx A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 proteins)

6. Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
   contains zinc-binding subdomain

7. Species Zymomonas mobilis [TaxId:542] [51716] (156 PDB entries)
   Uniprot P28720

8. Domain d6ygxa_: 6ygx A: [383548]
   automated match to d5lpta_
   protein/RNA complex; complexed with 726, zn

Details for d6ygxa_

PDB Entry: 6ygx, 1.35 Å

PDB Description: trna-guanine transglycosylase (tgt) labeled with 5-fluorotryptophan in co-crystallized complex with 6-amino-2-(methylamino)-4-(2-((2r,3r,4s, 5r,6s)-3,4,5,6-tetramethoxytetrahydro-2h-pyran-2-yl)ethyl)-1h- imidazo[4,5-g]quinazolin-8(7h)-one

PDB Compounds: (A:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d6ygxa_:

Sequence, based on SEQRES records:

>d6ygxa_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
drprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilg
ntyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshld
gsrhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsr
keqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvp
mlpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfse
dlkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegr
fsqfaqdfraryfa

Sequence, based on observed residues (ATOM records):

>d6ygxa_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
drprfsfsiaaregkartgtiemkrgvirtpafmpvgtagadiilgntyhlmlrpgaeri
aklgglhsfmgwdrpiltdsggyqvqseegvtfkshldgsrhmlspersieiqhllgsdi
vmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgsvfenlr
qqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkpddivga
vergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcavcqkwsrayi
hhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryfa

Timeline for d6ygxa_:

• d6ygxa_ first appeared in SCOPe 2.07