SCOPe 2.08: Domain d6yh3a_: 6yh3 A:

Lineage for d6yh3a_ (6yh3 A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 proteins)

6. Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
   contains zinc-binding subdomain

7. Species Zymomonas mobilis [TaxId:542] [51716] (156 PDB entries)
   Uniprot P28720

8. Domain d6yh3a_: 6yh3 A: [383530]
   automated match to d5lpta_
   protein/RNA complex; complexed with oqn, zn

Details for d6yh3a_

PDB Entry: 6yh3, 1.49 Å

PDB Description: trna-guanine transglycosylase (tgt) in co-crystallized complex with 6- amino-2-(methylamino)-4-phenethyl-1,7-dihydro-8h-imidazo[4,5- g]quinazolin-8-one

PDB Compounds: (A:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d6yh3a_:

Sequence, based on SEQRES records:

>d6yh3a_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
drprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilg
ntyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshld
gsrhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsr
keqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvp
mlpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfse
dlkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegr
fsqfaqdfraryfa

Sequence, based on observed residues (ATOM records):

>d6yh3a_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
drprfsfsiaaregkartgtiemkrgvirtpafmpvgtagadiilgntyhlmlrpgaeri
aklgglhsfmgwdrpiltdsggyqvmslsltkqseegvtfkgsrhmlspersieiqhllg
sdivmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgsvfe
nlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkpddi
vgavergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcavcqkwsr
ayihhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryfa

Timeline for d6yh3a_:

• d6yh3a_ first appeared in SCOPe 2.07