Lineage for d5rf8a_ (5rf8 A:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2387558Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2387559Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2389935Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 proteins)
  6. 2390138Protein automated matches [190384] (21 species)
    not a true protein
  7. 3082022Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382084] (300 PDB entries)
  8. 3082671Domain d5rf8a_: 5rf8 A: [382733]
    automated match to d3ea8a_
    complexed with dms, sfy

Details for d5rf8a_

PDB Entry: 5rf8 (more details), 1.44 Å

PDB Description: pandda analysis group deposition -- crystal structure of sars-cov-2 main protease in complex with z271004858
PDB Compounds: (A:) main protease

SCOPe Domain Sequences for d5rf8a_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5rf8a_ b.47.1.4 (A:) automated matches {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
sgfrkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyedllir
ksnhnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvlacyng
spsgvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtdlegn
fygpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamkynye
pltqdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdvvrqc
sgvt

SCOPe Domain Coordinates for d5rf8a_:

Click to download the PDB-style file with coordinates for d5rf8a_.
(The format of our PDB-style files is described here.)

Timeline for d5rf8a_:

  • d5rf8a_ is new in SCOPe 2.07-stable