Lineage for d5rfka_ (5rfk A:)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 proteins)
  6. Protein Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) [74979] (8 species)
    contains an extra alpha-helical domain
  7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [385979] (315 PDB entries)
  8. Domain d5rfka_: 5rfk A: [382703]
    automated match to d3ea8a_
    complexed with dms, t7d

    has additional subdomain(s) that are not in the common domain

Details for d5rfka_

PDB Entry: 5rfk (more details), 1.7500000000000002 Å

PDB Description: pandda analysis group deposition -- crystal structure of sars-cov-2 main protease in complex with pcm-0102575
PDB Compounds: (A:) 3C-like proteinase

SCOPe Domain Sequences for d5rfka_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5rfka_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
sgfrkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyedllir
ksnhnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvlacyng
spsgvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtdlegn
fygpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamkynye
pltqdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdvvrqc
sgvt

SCOPe Domain Coordinates for d5rfka_ are not available.

Timeline for d5rfka_: