Class d: Alpha and beta proteins (a+b) [53931] (388 folds) |
Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily) core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542 |
Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family) automatically mapped to Pfam PF09408 |
Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein) part of PfamB PB000266 |
Protein Spike protein S1 [143589] (4 species) |
Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (92 PDB entries) |
Domain d6lzgb_: 6lzg B: [382312] Other proteins in same PDB: d6lzga_ automated match to d2dd8s1 complexed with nag, zn |
Domain d6m0je_: 6m0j E: [382293] Other proteins in same PDB: d6m0ja_ automated match to d2dd8s1 complexed with nag, zn |
Domain d6m17e_: 6m17 E: [383012] automated match to d2dd8s1 complexed with leu, nag, zn |
Domain d6m17f_: 6m17 F: [383190] automated match to d2dd8s1 complexed with leu, nag, zn |
Domain d6w41c_: 6w41 C: [382908] Other proteins in same PDB: d6w41l1, d6w41l2 automated match to d2dd8s1 complexed with gol, nag, so4 |
Domain d6xe1e_: 6xe1 E: [388797] Other proteins in same PDB: d6xe1l1, d6xe1l2 automated match to d2dd8s1 complexed with nag |
Domain d6xkqa_: 6xkq A: [393309] Other proteins in same PDB: d6xkql1, d6xkql2 automated match to d2dd8s1 complexed with nag |
Domain d6ylaa_: 6yla A: [383947] Other proteins in same PDB: d6ylac1, d6ylac2, d6ylal1, d6ylal2 automated match to d2dd8s1 complexed with 1pe, dms, mli, nag, pg0 |
Domain d6ylae_: 6yla E: [383862] Other proteins in same PDB: d6ylac1, d6ylac2, d6ylal1, d6ylal2 automated match to d2dd8s1 complexed with 1pe, dms, mli, nag, pg0 |
Domain d6yz5e_: 6yz5 E: [387022] Other proteins in same PDB: d6yz5f_ automated match to d2dd8s1 complexed with act, edo, nag |
Domain d6z2ma_: 6z2m A: [387041] Other proteins in same PDB: d6z2mc1, d6z2mc2, d6z2md_, d6z2mf_, d6z2ml1, d6z2ml2 automated match to d2dd8s1 complexed with nag |
Domain d6z2me_: 6z2m E: [387089] Other proteins in same PDB: d6z2mc1, d6z2mc2, d6z2md_, d6z2mf_, d6z2ml1, d6z2ml2 automated match to d2dd8s1 complexed with nag |
Domain d6zcze_: 6zcz E: [388448] Other proteins in same PDB: d6zczf_, d6zczl1, d6zczl2 automated match to d2dd8s1 complexed with cl, mg, nag |
Domain d7b3oe_: 7b3o E: [396824] Other proteins in same PDB: d7b3ol1, d7b3ol2 automated match to d2ghwc_ |
Domain d7behe_: 7beh E: [398375] Other proteins in same PDB: d7behl1, d7behl2 automated match to d2dd8s1 complexed with fuc, gol, nag, trs |
Domain d7beie_: 7bei E: [398401] Other proteins in same PDB: d7beil1, d7beil2 automated match to d2dd8s1 complexed with cl, no3 |
Domain d7beje_: 7bej E: [398410] Other proteins in same PDB: d7bejl1, d7bejl2 automated match to d2dd8s1 complexed with fmt, gol |
Domain d7beke_: 7bek E: [398360] Other proteins in same PDB: d7bekl1, d7bekl2 automated match to d2dd8s1 complexed with cl, gol, peg, so4, trs |
Domain d7belr_: 7bel R: [398444] Other proteins in same PDB: d7belb1, d7belb2, d7beld1, d7beld2, d7belf1, d7bell1 automated match to d2dd8s1 complexed with act, bma, gol, man, nag |
Domain d7belx_: 7bel X: [398475] Other proteins in same PDB: d7belb1, d7belb2, d7beld1, d7beld2, d7belf1, d7bell1 automated match to d2dd8s1 complexed with act, bma, gol, man, nag |
Domain d7beme_: 7bem E: [398476] Other proteins in same PDB: d7bemh_, d7beml_ automated match to d2dd8s1 complexed with cl, gol, po4, pro |
Domain d7benc_: 7ben C: [398455] Other proteins in same PDB: d7benb1, d7benb2, d7benf1, d7benf2, d7beni1, d7beni2, d7benl1, d7benl2 automated match to d2dd8s1 complexed with br, fuc, gol, imd, iod, nag, peg, pg6 |
Domain d7bene_: 7ben E: [398705] Other proteins in same PDB: d7benb1, d7benb2, d7benf1, d7benf2, d7beni1, d7beni2, d7benl1, d7benl2 automated match to d2dd8s1 complexed with br, fuc, gol, imd, iod, nag, peg, pg6 |
Domain d7beor_: 7beo R: [398398] Other proteins in same PDB: d7beob1, d7beob2, d7beod1, d7beod2, d7beof1, d7beof2, d7beol1, d7beol2 automated match to d2dd8s1 complexed with act, cl, fuc, gol, nag |
Domain d7beox_: 7beo X: [398411] Other proteins in same PDB: d7beob1, d7beob2, d7beod1, d7beod2, d7beof1, d7beof2, d7beol1, d7beol2 automated match to d2dd8s1 complexed with act, cl, fuc, gol, nag |
Domain d7bepc1: 7bep C:333-528 [398601] Other proteins in same PDB: d7bepc2, d7bepe2, d7bepi1, d7bepi2, d7bepl1, d7bepl2 automated match to d2dd8s1 complexed with cl, glu, gly, gol, imd, peg, pg4, pge |
Domain d7bepe1: 7bep E:333-528 [398424] Other proteins in same PDB: d7bepc2, d7bepe2, d7bepi1, d7bepi2, d7bepl1, d7bepl2 automated match to d2dd8s1 complexed with cl, glu, gly, gol, imd, peg, pg4, pge |
Domain d7bh9e_: 7bh9 E: [398521] Other proteins in same PDB: d7bh9a_ automated match to d2dd8s1 complexed with nag, zn |
Domain d7bwje_: 7bwj E: [386452] Other proteins in same PDB: d7bwjl1, d7bwjl2 automated match to d2dd8s1 complexed with nag |
Domain d7bz5a_: 7bz5 A: [385323] Other proteins in same PDB: d7bz5l1, d7bz5l2 automated match to d2dd8s1 complexed with nag |
Domain d7c8db_: 7c8d B: [389845] Other proteins in same PDB: d7c8da_ automated match to d2dd8s1 complexed with zn |
Domain d7c8jb_: 7c8j B: [398664] automated match to d2dd8s1 complexed with zn |
Domain d7cdie_: 7cdi E: [394430] Other proteins in same PDB: d7cdil1, d7cdil2 automated match to d2dd8s1 complexed with nag |
Domain d7ch4r_: 7ch4 R: [389921] Other proteins in same PDB: d7ch4l1, d7ch4l2 automated match to d2dd8s1 |
Domain d7ch5r_: 7ch5 R: [389955] Other proteins in same PDB: d7ch5l1, d7ch5l2 automated match to d2dd8s1 |
Domain d7chbr_: 7chb R: [389926] Other proteins in same PDB: d7chbl1, d7chbl2 automated match to d2dd8s1 |
Domain d7chpe_: 7chp E: [404670] Other proteins in same PDB: d7chpl1, d7chpl2 automated match to d2dd8s1 complexed with nag |
Domain d7chse_: 7chs E: [404785] Other proteins in same PDB: d7chsl1, d7chsl2 automated match to d2dd8s1 complexed with nag |
Domain d7cjfc_: 7cjf C: [394485] Other proteins in same PDB: d7cjfb1, d7cjfb2 automated match to d2dd8s1 complexed with nag |
Domain d7cm4a_: 7cm4 A: [398708] Other proteins in same PDB: d7cm4l1, d7cm4l2 automated match to d2dd8s1 complexed with edo, ni |
Domain d7deob1: 7deo B:334-530 [401970] Other proteins in same PDB: d7deoa1, d7deoa2, d7deob2, d7deoc1, d7deoc2 automated match to d2dd8s1 complexed with ca, nag |
Domain d7deod_: 7deo D: [401967] Other proteins in same PDB: d7deoa1, d7deoa2, d7deob2, d7deoc1, d7deoc2 automated match to d2dd8s1 complexed with ca, nag |
Domain d7deua_: 7deu A: [401964] Other proteins in same PDB: d7deub1, d7deub2, d7deub3 automated match to d2dd8s1 complexed with nag |
Domain d7djzc_: 7djz C: [404964] Other proteins in same PDB: d7djzb1, d7djzb2 automated match to d2dd8s1 complexed with cit, nag |
Domain d7e3jb_: 7e3j B: [402002] automated match to d2dd8s1 complexed with nag, zn |
Domain d7e86c1: 7e86 C:334-526 [405228] Other proteins in same PDB: d7e86b1, d7e86b2, d7e86c2 automated match to d2dd8s1 |
Domain d7e88c_: 7e88 C: [405234] Other proteins in same PDB: d7e88b1, d7e88b2, d7e88e1, d7e88e2, d7e88h1, d7e88h2, d7e88k1, d7e88k2 automated match to d2dd8s1 |
Domain d7e88f_: 7e88 F: [405174] Other proteins in same PDB: d7e88b1, d7e88b2, d7e88e1, d7e88e2, d7e88h1, d7e88h2, d7e88k1, d7e88k2 automated match to d2dd8s1 |
Domain d7e88i_: 7e88 I: [405196] Other proteins in same PDB: d7e88b1, d7e88b2, d7e88e1, d7e88e2, d7e88h1, d7e88h2, d7e88k1, d7e88k2 automated match to d2dd8s1 |
Domain d7e88l_: 7e88 L: [405272] Other proteins in same PDB: d7e88b1, d7e88b2, d7e88e1, d7e88e2, d7e88h1, d7e88h2, d7e88k1, d7e88k2 automated match to d2dd8s1 |
Domain d7e8fr_: 7e8f R: [405219] Other proteins in same PDB: d7e8fb_, d7e8fe_, d7e8fl1 automated match to d2dd8s1 |
Domain d7e8me_: 7e8m E: [405110] Other proteins in same PDB: d7e8ml1, d7e8ml2 automated match to d2dd8s1 complexed with nag |
Domain d7eana_: 7ean A: [402058] Other proteins in same PDB: d7eanl1, d7eanl2 automated match to d2dd8s1 complexed with nag |
Domain d7jmoa_: 7jmo A: [390281] Other proteins in same PDB: d7jmol1, d7jmol2 automated match to d2dd8s1 complexed with nag |
Domain d7jmpa_: 7jmp A: [390271] Other proteins in same PDB: d7jmpl1, d7jmpl2 automated match to d2dd8s1 complexed with nag |
Domain d7jmwa_: 7jmw A: [390264] Other proteins in same PDB: d7jmwl1, d7jmwl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfva_: 7kfv A: [394893] Other proteins in same PDB: d7kfvd1, d7kfvd2, d7kfvg1, d7kfvg2, d7kfvl1, d7kfvl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfvb_: 7kfv B: [394916] Other proteins in same PDB: d7kfvd1, d7kfvd2, d7kfvg1, d7kfvg2, d7kfvl1, d7kfvl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfve_: 7kfv E: [395010] Other proteins in same PDB: d7kfvd1, d7kfvd2, d7kfvg1, d7kfvg2, d7kfvl1, d7kfvl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfwa_: 7kfw A: [394965] Other proteins in same PDB: d7kfwd1, d7kfwd2, d7kfwg1, d7kfwg2, d7kfwl1, d7kfwl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfwb_: 7kfw B: [394943] Other proteins in same PDB: d7kfwd1, d7kfwd2, d7kfwg1, d7kfwg2, d7kfwl1, d7kfwl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfwe_: 7kfw E: [395030] Other proteins in same PDB: d7kfwd1, d7kfwd2, d7kfwg1, d7kfwg2, d7kfwl1, d7kfwl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfxa_: 7kfx A: [394946] Other proteins in same PDB: d7kfxl1, d7kfxl2 automated match to d2dd8s1 complexed with nag |
Domain d7kfya_: 7kfy A: [394911] Other proteins in same PDB: d7kfyl1, d7kfyl2 automated match to d2dd8s1 complexed with nag |
Domain d7kmhc1: 7kmh C:334-527 [399304] Other proteins in same PDB: d7kmhb1, d7kmhb2, d7kmhc2 automated match to d2dd8s1 complexed with gol, nag, pro |
Domain d7kmic1: 7kmi C:334-527 [399399] Other proteins in same PDB: d7kmib1, d7kmib2, d7kmic2 automated match to d2dd8s1 complexed with gol, nag |
Domain d7kn6a_: 7kn6 A: [399372] Other proteins in same PDB: d7kn6c_, d7kn6l1, d7kn6l2 automated match to d2dd8s1 complexed with nag |
Domain d7kn7a_: 7kn7 A: [399293] Other proteins in same PDB: d7kn7b_, d7kn7l1, d7kn7l2 automated match to d2dd8s1 complexed with nag |
Domain d7l0nr_: 7l0n R: [399411] Other proteins in same PDB: d7l0nb1, d7l0nb2, d7l0nd1, d7l0nd2, d7l0ne_, d7l0nf_, d7l0nl1, d7l0nl2, d7l0nn1, d7l0nn2 automated match to d2dd8s1 complexed with cl, na, nag, pg4, pg5, pge, so4, zn |
Domain d7l0ns_: 7l0n S: [399434] Other proteins in same PDB: d7l0nb1, d7l0nb2, d7l0nd1, d7l0nd2, d7l0ne_, d7l0nf_, d7l0nl1, d7l0nl2, d7l0nn1, d7l0nn2 automated match to d2dd8s1 complexed with cl, na, nag, pg4, pg5, pge, so4, zn |
Domain d7l5ba_: 7l5b A: [399528] automated match to d2dd8s1 |
Domain d7ldja1: 7ldj A:334-527 [403446] Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2 automated match to d2dd8s1 complexed with man, nag, pg4 |
Domain d7ldjb1: 7ldj B:331-527 [403470] Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2 automated match to d2dd8s1 complexed with man, nag, pg4 |
Domain d7ldjc1: 7ldj C:331-527 [403479] Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2 automated match to d2dd8s1 complexed with man, nag, pg4 |
Domain d7ldjd_: 7ldj D: [403484] Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2 automated match to d2dd8s1 complexed with man, nag, pg4 |
Domain d7lo4b1: 7lo4 B:333-530 [402471] Other proteins in same PDB: d7lo4a_, d7lo4b2 automated match to d2dd8s1 complexed with edo, nag, zn; mutant |
Domain d7lopa_: 7lop A: [399708] Other proteins in same PDB: d7lopc1, d7lopc2, d7lopl1, d7lopl2, d7lopv1, d7lopv2, d7lopy1, d7lopy2 automated match to d2dd8s1 complexed with nag |
Domain d7lopz_: 7lop Z: [399881] Other proteins in same PDB: d7lopc1, d7lopc2, d7lopl1, d7lopl2, d7lopv1, d7lopv2, d7lopy1, d7lopy2 automated match to d2dd8s1 complexed with nag |
Domain d7m7wr_: 7m7w R: [403706] Other proteins in same PDB: d7m7wb1, d7m7wb2, d7m7wd1, d7m7wd2, d7m7wf1, d7m7wf2, d7m7wl1, d7m7wl2 automated match to d2dd8s1 complexed with nag |
Domain d7m7ws_: 7m7w S: [403631] Other proteins in same PDB: d7m7wb1, d7m7wb2, d7m7wd1, d7m7wd2, d7m7wf1, d7m7wf2, d7m7wl1, d7m7wl2 automated match to d2dd8s1 complexed with nag |
Domain d7mf1a_: 7mf1 A: [403594] automated match to d2dd8s1 complexed with nag |
Domain d7mkma_: 7mkm A: [403721] Other proteins in same PDB: d7mkmh_, d7mkml_ automated match to d2ghwa_ complexed with nag |
Domain d7nege_: 7neg E: [400045] Other proteins in same PDB: d7negl1, d7negl2 automated match to d2dd8s1 complexed with gol, so4; mutant |
Domain d7nehe1: 7neh E:333-527 [400057] Other proteins in same PDB: d7nehe2, d7nehl1, d7nehl2 automated match to d2dd8s1 complexed with cl, edo, no3, peg, so4 |
Domain d7nxcb_: 7nxc B: [402608] Other proteins in same PDB: d7nxca_ automated match to d2dd8s1 complexed with nag |
Timeline for Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] from d.318.1.1 Spike protein S1: