SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (60 families)
Family c.66.1.48: Nsp15 N-terminal domain-like [142625] (2 proteins)
rudiment methyltransferase fold that probably has lost the enzymatic activity; contains extra N-terminal alpha+beta subdomain
Protein automated matches [381979] (2 species)
not a true protein

Species:

Sars coronavirus [TaxId:227859] [381980] (1 PDB entry)
- Domains for 6vww:
  1. Domain d6vwwa1: 6vww A:2-191 [381981]
    Other proteins in same PDB: d6vwwa2, d6vwwa3, d6vwwb2, d6vwwb3
    automated match to d2rhba1
    complexed with acy, cl, gol, mg
  2. Domain d6vwwb1: 6vww B:2-191 [382042]
    Other proteins in same PDB: d6vwwa2, d6vwwa3, d6vwwb2, d6vwwb3
    automated match to d2rhba1
    complexed with acy, cl, gol, mg

Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382217] (33 PDB entries)

Domains for 5s6x:
1. Domain d5s6xa1: 5s6x A:1-190 [395587]
  Other proteins in same PDB: d5s6xa2, d5s6xa3, d5s6xb2, d5s6xb3
  automated match to d2rhba1
  complexed with cit, wug
2. Domain d5s6xb1: 5s6x B:1-190 [395639]
  Other proteins in same PDB: d5s6xa2, d5s6xa3, d5s6xb2, d5s6xb3
  automated match to d2rhba1
  complexed with cit, wug
Domains for 5s6y:
1. Domain d5s6ya1: 5s6y A:1-190 [395540]
  Other proteins in same PDB: d5s6ya2, d5s6ya3, d5s6yb2, d5s6yb3
  automated match to d2rhba1
  complexed with cit, wuj
2. Domain d5s6yb1: 5s6y B:1-190 [395608]
  Other proteins in same PDB: d5s6ya2, d5s6ya3, d5s6yb2, d5s6yb3
  automated match to d2rhba1
  complexed with cit, wuj
Domains for 5s6z:
1. Domain d5s6za1: 5s6z A:1-190 [395820]
  Other proteins in same PDB: d5s6za2, d5s6za3, d5s6zb2, d5s6zb3
  automated match to d2rhba1
  complexed with cit, wum
2. Domain d5s6zb1: 5s6z B:1-190 [395611]
  Other proteins in same PDB: d5s6za2, d5s6za3, d5s6zb2, d5s6zb3
  automated match to d2rhba1
  complexed with cit, wum
Domains for 5s70:
1. Domain d5s70a1: 5s70 A:1-190 [395734]
  Other proteins in same PDB: d5s70a2, d5s70a3, d5s70b2, d5s70b3
  automated match to d2rhba1
  complexed with cit, wus
2. Domain d5s70b1: 5s70 B:1-190 [395634]
  Other proteins in same PDB: d5s70a2, d5s70a3, d5s70b2, d5s70b3
  automated match to d2rhba1
  complexed with cit, wus
Domains for 5s71:
1. Domain d5s71a1: 5s71 A:1-190 [395630]
  Other proteins in same PDB: d5s71a2, d5s71a3, d5s71b2, d5s71b3
  automated match to d2rhba1
  complexed with cit, wuv
2. Domain d5s71b1: 5s71 B:1-190 [395617]
  Other proteins in same PDB: d5s71a2, d5s71a3, d5s71b2, d5s71b3
  automated match to d2rhba1
  complexed with cit, wuv
Domains for 5s72:
1. Domain d5s72a1: 5s72 A:1-190 [395645]
  Other proteins in same PDB: d5s72a2, d5s72a3, d5s72b2, d5s72b3
  automated match to d2rhba1
  complexed with cit, wuy
2. Domain d5s72b1: 5s72 B:1-190 [395697]
  Other proteins in same PDB: d5s72a2, d5s72a3, d5s72b2, d5s72b3
  automated match to d2rhba1
  complexed with cit, wuy
Domains for 5sa4:
1. Domain d5sa4a1: 5sa4 A:1-190 [407149]
  Other proteins in same PDB: d5sa4a2, d5sa4a3, d5sa4b2, d5sa4b3
  automated match to d2rhba1
  complexed with k3a
2. Domain d5sa4b1: 5sa4 B:1-190 [407114]
  Other proteins in same PDB: d5sa4a2, d5sa4a3, d5sa4b2, d5sa4b3
  automated match to d2rhba1
  complexed with k3a
Domains for 5sa5:
1. Domain d5sa5a1: 5sa5 A:1-190 [407194]
  Other proteins in same PDB: d5sa5a2, d5sa5a3, d5sa5b2, d5sa5b3
  automated match to d2rhba1
  complexed with cit, zqa
2. Domain d5sa5b1: 5sa5 B:1-190 [407065]
  Other proteins in same PDB: d5sa5a2, d5sa5a3, d5sa5b2, d5sa5b3
  automated match to d2rhba1
  complexed with cit, zqa
Domains for 5sa6:
1. Domain d5sa6a1: 5sa6 A:1-190 [407081]
  Other proteins in same PDB: d5sa6a2, d5sa6a3, d5sa6b2, d5sa6b3
  automated match to d2rhba1
  complexed with o3g
2. Domain d5sa6b1: 5sa6 B:1-190 [407073]
  Other proteins in same PDB: d5sa6a2, d5sa6a3, d5sa6b2, d5sa6b3
  automated match to d2rhba1
  complexed with o3g
Domains for 5sa7:
1. Domain d5sa7a1: 5sa7 A:1-190 [406954]
  Other proteins in same PDB: d5sa7a2, d5sa7a3, d5sa7b2, d5sa7b3
  automated match to d2rhba1
  complexed with wl7
2. Domain d5sa7b1: 5sa7 B:1-190 [406848]
  Other proteins in same PDB: d5sa7a2, d5sa7a3, d5sa7b2, d5sa7b3
  automated match to d2rhba1
  complexed with wl7
Domains for 5sa8:
1. Domain d5sa8a1: 5sa8 A:1-190 [406870]
  Other proteins in same PDB: d5sa8a2, d5sa8a3, d5sa8b2, d5sa8b3
  automated match to d2rhba1
  complexed with jov
2. Domain d5sa8b1: 5sa8 B:1-190 [406893]
  Other proteins in same PDB: d5sa8a2, d5sa8a3, d5sa8b2, d5sa8b3
  automated match to d2rhba1
  complexed with jov
Domains for 5sa9:
1. Domain d5sa9a1: 5sa9 A:1-190 [406800]
  Other proteins in same PDB: d5sa9a2, d5sa9a3, d5sa9b2, d5sa9b3
  automated match to d2rhba1
  complexed with gwg
2. Domain d5sa9b1: 5sa9 B:1-190 [407204]
  Other proteins in same PDB: d5sa9a2, d5sa9a3, d5sa9b2, d5sa9b3
  automated match to d2rhba1
  complexed with gwg
Domains for 5saa:
1. Domain d5saaa1: 5saa A:1-190 [407051]
  Other proteins in same PDB: d5saaa2, d5saaa3, d5saab2, d5saab3
  automated match to d2rhba1
  complexed with cit, zqd
2. Domain d5saab1: 5saa B:1-190 [407140]
  Other proteins in same PDB: d5saaa2, d5saaa3, d5saab2, d5saab3
  automated match to d2rhba1
  complexed with cit, zqd
Domains for 5sab:
1. Domain d5saba1: 5sab A:1-190 [407025]
  Other proteins in same PDB: d5saba2, d5saba3, d5sabb2, d5sabb3
  automated match to d2rhba1
  complexed with cit, wjd
2. Domain d5sabb1: 5sab B:1-190 [406941]
  Other proteins in same PDB: d5saba2, d5saba3, d5sabb2, d5sabb3
  automated match to d2rhba1
  complexed with cit, wjd
Domains for 5sac:
1. Domain d5saca1: 5sac A:1-190 [407077]
  Other proteins in same PDB: d5saca2, d5saca3, d5sacb2, d5sacb3
  automated match to d2rhba1
  complexed with cit, vwg
2. Domain d5sacb1: 5sac B:1-190 [407170]
  Other proteins in same PDB: d5saca2, d5saca3, d5sacb2, d5sacb3
  automated match to d2rhba1
  complexed with cit, vwg
Domains for 5sad:
1. Domain d5sada1: 5sad A:1-190 [406804]
  Other proteins in same PDB: d5sada2, d5sada3, d5sadb2, d5sadb3
  automated match to d2rhba1
  complexed with ejw
2. Domain d5sadb1: 5sad B:1-190 [407124]
  Other proteins in same PDB: d5sada2, d5sada3, d5sadb2, d5sadb3
  automated match to d2rhba1
  complexed with ejw
Domains for 5sae:
1. Domain d5saea1: 5sae A:1-190 [407111]
  Other proteins in same PDB: d5saea2, d5saea3, d5saeb2, d5saeb3
  automated match to d2rhba1
  complexed with cit, w3g
2. Domain d5saeb1: 5sae B:1-190 [407145]
  Other proteins in same PDB: d5saea2, d5saea3, d5saeb2, d5saeb3
  automated match to d2rhba1
  complexed with cit, w3g
Domains for 5saf:
1. Domain d5safa1: 5saf A:1-190 [407060]
  Other proteins in same PDB: d5safa2, d5safa3, d5safb2, d5safb3
  automated match to d2rhba1
  complexed with cit, woy
2. Domain d5safb1: 5saf B:1-190 [407030]
  Other proteins in same PDB: d5safa2, d5safa3, d5safb2, d5safb3
  automated match to d2rhba1
  complexed with cit, woy
Domains for 5sag:
1. Domain d5saga1: 5sag A:1-190 [407167]
  Other proteins in same PDB: d5saga2, d5saga3, d5sagb2, d5sagb3
  automated match to d2rhba1
  complexed with zqg
2. Domain d5sagb1: 5sag B:1-190 [407098]
  Other proteins in same PDB: d5saga2, d5saga3, d5sagb2, d5sagb3
  automated match to d2rhba1
  complexed with zqg
Domains for 5sah:
1. Domain d5saha1: 5sah A:1-190 [407108]
  Other proteins in same PDB: d5saha2, d5saha3, d5sahb2, d5sahb3
  automated match to d2rhba1
  complexed with zqj
2. Domain d5sahb1: 5sah B:1-190 [407093]
  Other proteins in same PDB: d5saha2, d5saha3, d5sahb2, d5sahb3
  automated match to d2rhba1
  complexed with zqj
Domains for 5sai:
1. Domain d5saia1: 5sai A:1-190 [407265]
  Other proteins in same PDB: d5saia2, d5saia3, d5saib2, d5saib3
  automated match to d2rhba1
  complexed with zqm
2. Domain d5saib1: 5sai B:1-190 [406983]
  Other proteins in same PDB: d5saia2, d5saia3, d5saib2, d5saib3
  automated match to d2rhba1
  complexed with zqm
Domains for 6w01:
1. Domain d6w01a1: 6w01 A:2-191 [382244]
  Other proteins in same PDB: d6w01a2, d6w01a3, d6w01b2, d6w01b3
  automated match to d2rhba1
  complexed with cit, edo, peg
2. Domain d6w01b1: 6w01 B:2-191 [382218]
  Other proteins in same PDB: d6w01a2, d6w01a3, d6w01b2, d6w01b3
  automated match to d2rhba1
  complexed with cit, edo, peg
Domains for 6wlc:
1. Domain d6wlca1: 6wlc A:0-191 [384918]
  Other proteins in same PDB: d6wlca2, d6wlcb2
  automated match to d2rhba1
  complexed with act, edo, fmt, so4, trs, u5p
2. Domain d6wlcb1: 6wlc B:0-191 [384927]
  Other proteins in same PDB: d6wlca2, d6wlcb2
  automated match to d2rhba1
  complexed with act, edo, fmt, so4, trs, u5p
Domains for 6wxc:
1. Domain d6wxca1: 6wxc A:2-191 [386045]
  Other proteins in same PDB: d6wxca2, d6wxca3, d6wxcb2, d6wxcb3
  automated match to d2rhba1
  complexed with cmu, edo, fmt, po4
2. Domain d6wxcb1: 6wxc B:2-191 [386037]
  Other proteins in same PDB: d6wxca2, d6wxca3, d6wxcb2, d6wxcb3
  automated match to d2rhba1
  complexed with cmu, edo, fmt, po4
Domains for 6x4i:
1. Domain d6x4ia1: 6x4i A:2-191 [387099]
  Other proteins in same PDB: d6x4ia2, d6x4ia3, d6x4ib2, d6x4ib3
  automated match to d2rhba1
  complexed with edo, na, u3p
2. Domain d6x4ib1: 6x4i B:2-191 [387014]
  Other proteins in same PDB: d6x4ia2, d6x4ia3, d6x4ib2, d6x4ib3
  automated match to d2rhba1
  complexed with edo, na, u3p
Domains for 6xdh:
1. Domain d6xdha1: 6xdh A:2-191 [388088]
  Other proteins in same PDB: d6xdha2, d6xdha3, d6xdhb2, d6xdhb3
  automated match to d2rhba1
  complexed with act, cit, edo, fmt
2. Domain d6xdhb1: 6xdh B:2-191 [388078]
  Other proteins in same PDB: d6xdha2, d6xdha3, d6xdhb2, d6xdhb3
  automated match to d2rhba1
  complexed with act, cit, edo, fmt
Domains for 7k1l:
1. Domain d7k1la1: 7k1l A:2-191 [390404]
  Other proteins in same PDB: d7k1la2, d7k1la3, d7k1lb2, d7k1lb3
  automated match to d2rhba1
  complexed with act, edo, so4, uvc
2. Domain d7k1lb1: 7k1l B:2-191 [390370]
  Other proteins in same PDB: d7k1la2, d7k1la3, d7k1lb2, d7k1lb3
  automated match to d2rhba1
  complexed with act, edo, so4, uvc
Domains for 7k1o:
1. Domain d7k1oa1: 7k1o A:2-191 [390394]
  Other proteins in same PDB: d7k1oa2, d7k1oa3, d7k1ob2, d7k1ob3, d7k1oc2, d7k1oc3
  automated match to d2rhba1
  complexed with edo, vqv
2. Domain d7k1ob1: 7k1o B:2-191 [390397]
  Other proteins in same PDB: d7k1oa2, d7k1oa3, d7k1ob2, d7k1ob3, d7k1oc2, d7k1oc3
  automated match to d2rhba1
  complexed with edo, vqv
3. Domain d7k1oc1: 7k1o C:2-191 [390460]
  Other proteins in same PDB: d7k1oa2, d7k1oa3, d7k1ob2, d7k1ob3, d7k1oc2, d7k1oc3
  automated match to d2rhba1
  complexed with edo, vqv
Domains for 7k9p:
1. Domain d7k9pa1: 7k9p A:2-191 [390432]
  Other proteins in same PDB: d7k9pa2, d7k9pa3, d7k9pb2, d7k9pb3
  automated match to d2rhba1
  complexed with cit
2. Domain d7k9pb1: 7k9p B:2-191 [390470]
  Other proteins in same PDB: d7k9pa2, d7k9pa3, d7k9pb2, d7k9pb3
  automated match to d2rhba1
  complexed with cit
Domains for 7keg:
1. Domain d7kega1: 7keg A:1-190 [394982]
  Other proteins in same PDB: d7kega2, d7kega3, d7kegb2, d7kegb3
  automated match to d2rhba1
  complexed with po4
2. Domain d7kegb1: 7keg B:1-190 [394959]
  Other proteins in same PDB: d7kega2, d7kega3, d7kegb2, d7kegb3
  automated match to d2rhba1
  complexed with po4
Domains for 7keh:
1. Domain d7keha1: 7keh A:1-190 [394979]
  Other proteins in same PDB: d7keha2, d7keha3, d7kehb2, d7kehb3
  automated match to d2rhba1
  complexed with b3p, so4
2. Domain d7kehb1: 7keh B:1-190 [394976]
  Other proteins in same PDB: d7keha2, d7keha3, d7kehb2, d7kehb3
  automated match to d2rhba1
  complexed with b3p, so4

Domains for 7kf4:

Domain d7kf4a1: 7kf4 A:1-190 [394924]
Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
automated match to d2rhba1
complexed with cit

Domain d7kf4b1: 7kf4 B:1-190 [395018]
Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
automated match to d2rhba1
complexed with cit

Domain d7kf4c1: 7kf4 C:1-190 [395076]
Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
automated match to d2rhba1
complexed with cit

Domain d7kf4d1: 7kf4 D:1-190 [394967]
Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
automated match to d2rhba1
complexed with cit

Domain d7kf4e1: 7kf4 E:1-190 [394921]
Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
automated match to d2rhba1
complexed with cit

Domain d7kf4f1: 7kf4 F:1-190 [395102]
Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
automated match to d2rhba1
complexed with cit

Domains for 7me0:
1. Domain d7me0a1: 7me0 A:1-190 [403803]
  Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
  automated match to d2rhba1
2. Domain d7me0b1: 7me0 B:1-190 [403680]
  Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
  automated match to d2rhba1
3. Domain d7me0c1: 7me0 C:1-190 [403633]
  Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
  automated match to d2rhba1
4. Domain d7me0d1: 7me0 D:1-190 [403739]
  Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
  automated match to d2rhba1
5. Domain d7me0e1: 7me0 E:1-190 [403866]
  Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
  automated match to d2rhba1
6. Domain d7me0f1: 7me0 F:1-190 [403639]
  Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
  automated match to d2rhba1

More info for Protein automated matches from c.66.1.48: Nsp15 N-terminal domain-like

Timeline for Protein automated matches from c.66.1.48: Nsp15 N-terminal domain-like:

Protein automated matches from c.66.1.48: Nsp15 N-terminal domain-like is new in SCOPe 2.07-stable
Protein automated matches from c.66.1.48: Nsp15 N-terminal domain-like appears in the current release, SCOPe 2.08