SCOPe 2.08: Domain d6jfda_: 6jfd A:

Lineage for d6jfda_ (6jfd A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

4. Superfamily d.167.1: Peptide deformylase [56420] (2 families)
   nickel-dependent enzyme

5. Family d.167.1.0: automated matches [191587] (1 protein)
   not a true family

6. Protein automated matches [191055] (20 species)
   not a true protein

7. Species Pseudomonas aeruginosa [TaxId:287] [380338] (6 PDB entries)

8. Domain d6jfda_: 6jfd A: [380341]
   automated match to d5kobc_
   complexed with k1u, ni

Details for d6jfda_

PDB Entry: 6jfd, 2.4 Å

PDB Description: k1u bound crystal structure of class i type b peptide deformylase from pseudomonas aeruginosa

PDB Compounds: (A:) Peptide deformylase

SCOPe Domain Sequences for d6jfda_:

Sequence, based on SEQRES records:

>d6jfda_ d.167.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgferserypdapavpptillnpritplddemeegwegclsvpglrgavsrhrriryqg
ldpqgqpidrsvegfharvvqhecdhligrlypsritdfskfgftevl

Sequence, based on observed residues (ATOM records):

>d6jfda_ d.167.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgfepavpptillnpritplddemeegwegclsvpglrgavsrhrriryqgldpqgqpi
drsvegfharvvqhecdhligrlypsritdfskfgftevl

Timeline for d6jfda_:

• d6jfda_ first appeared in SCOPe 2.07