SCOPe 2.08: Domain d6jf5a_: 6jf5 A:

Lineage for d6jf5a_ (6jf5 A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

4. Superfamily d.167.1: Peptide deformylase [56420] (2 families)
   nickel-dependent enzyme

5. Family d.167.1.0: automated matches [191587] (1 protein)
   not a true family

6. Protein automated matches [191055] (20 species)
   not a true protein

7. Species Acinetobacter baumannii [TaxId:470] [380329] (6 PDB entries)

8. Domain d6jf5a_: 6jf5 A: [380330]
   automated match to d2defa_
   complexed with k2u, zn

Details for d6jf5a_

PDB Entry: 6jf5, 2 Å

PDB Description: k2u bound crystal structure of class i type b peptide deformylase from acinetobacter baumannii

PDB Compounds: (A:) Peptide deformylase

SCOPe Domain Sequences for d6jf5a_:

Sequence, based on SEQRES records:

>d6jf5a_ d.167.1.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 470]}
svvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskr
viivasrpnprypdapemnavvmvnpeilefssetclgeegclsvpdergqveraemvkv
kyltlqgeavetifhgfparivqhevdhlngilfver

Sequence, based on observed residues (ATOM records):

>d6jf5a_ d.167.1.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 470]}
svvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskr
viivamnavvmvnpeilefssetclgeegclsvpdergqveraemvkvkyltlqgeavet
ifhgfparivqhevdhlngilfver

Timeline for d6jf5a_:

• d6jf5a_ first appeared in SCOPe 2.07