Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3006866Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
    core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
  4. 3006867Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families) (S)
  5. 3006868Family d.218.1.1: Kanamycin nucleotidyltransferase (KNTase), N-terminal domain [56708] (2 proteins)
    insert X in the core is a beta-strand ; mixed 4-stranded sheet, order: 1243
  6. 3006875Protein automated matches [378998] (3 species)
    not a true protein

Species:

  1. 3006876Bacillus sp. [TaxId:1409] [379550] (4 PDB entries)
    1. Domains for 6p01:
      1. 3006877Domain d6p01a1: 6p01 A:2-125 [379575]
        Other proteins in same PDB: d6p01a2, d6p01b2
        automated match to d1knya2
        protein/DNA complex; complexed with cl, gol, mg; mutant
      2. 3006878Domain d6p01b1: 6p01 B:2-125 [379611]
        Other proteins in same PDB: d6p01a2, d6p01b2
        automated match to d1knya2
        protein/DNA complex; complexed with cl, gol, mg; mutant
    2. Domains for 6p04:
      1. 3006881Domain d6p04a1: 6p04 A:2-125 [379559]
        Other proteins in same PDB: d6p04a2, d6p04b2
        automated match to d1knya2
        protein/DNA complex; complexed with mg, nmy; mutant
      2. 3006882Domain d6p04b1: 6p04 B:2-125 [379585]
        Other proteins in same PDB: d6p04a2, d6p04b2
        automated match to d1knya2
        protein/DNA complex; complexed with mg, nmy; mutant
    3. Domains for 6p06:
      1. 3006883Domain d6p06a1: 6p06 A:1-125 [379556]
        Other proteins in same PDB: d6p06a2, d6p06b2
        automated match to d1knya2
        protein/DNA complex; complexed with apc, ca, nmy; mutant
      2. 3006884Domain d6p06b1: 6p06 B:2-125 [379554]
        Other proteins in same PDB: d6p06a2, d6p06b2
        automated match to d1knya2
        protein/DNA complex; complexed with apc, ca, nmy; mutant
    4. Domains for 6p08:
      1. 3006879Domain d6p08a1: 6p08 A:2-125 [379632]
        Other proteins in same PDB: d6p08a2, d6p08d2
        automated match to d1knya2
        protein/DNA complex; complexed with amp, mg, nmy, ppv; mutant
      2. 3006880Domain d6p08d1: 6p08 D:2-125 [379551]
        Other proteins in same PDB: d6p08a2, d6p08d2
        automated match to d1knya2
        protein/DNA complex; complexed with amp, mg, nmy, ppv; mutant
  2. 3006885Geobacillus stearothermophilus [TaxId:1422] [378999] (4 PDB entries)
    1. Domains for 6nmk:
      1. 3006888Domain d6nmka1: 6nmk A:2-125 [379045]
        Other proteins in same PDB: d6nmka2, d6nmkb2
        automated match to d1knya2
        protein/DNA complex; complexed with ca, mg, nmy; mutant
      2. 3006889Domain d6nmkb1: 6nmk B:1-125 [379037]
        Other proteins in same PDB: d6nmka2, d6nmkb2
        automated match to d1knya2
        protein/DNA complex; complexed with ca, mg, nmy; mutant
    2. Domains for 6nml:
      1. 3006890Domain d6nmla1: 6nml A:1-125 [379010]
        Other proteins in same PDB: d6nmla2, d6nmlb2
        automated match to d1knya2
        protein/DNA complex; complexed with apc, mg, nmy; mutant
      2. 3006891Domain d6nmlb1: 6nml B:2-125 [379013]
        Other proteins in same PDB: d6nmla2, d6nmlb2
        automated match to d1knya2
        protein/DNA complex; complexed with apc, mg, nmy; mutant
    3. Domains for 6nmm:
      1. 3006892Domain d6nmma1: 6nmm A:2-125 [379000]
        Other proteins in same PDB: d6nmma2, d6nmmb2, d6nmmc2, d6nmmd2
        automated match to d1knya2
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
      2. 3006893Domain d6nmmb1: 6nmm B:2-125 [379008]
        Other proteins in same PDB: d6nmma2, d6nmmb2, d6nmmc2, d6nmmd2
        automated match to d1knya2
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
      3. 3006894Domain d6nmmc1: 6nmm C:2-125 [379069]
        Other proteins in same PDB: d6nmma2, d6nmmb2, d6nmmc2, d6nmmd2
        automated match to d1knya2
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
      4. 3006895Domain d6nmmd1: 6nmm D:2-125 [379039]
        Other proteins in same PDB: d6nmma2, d6nmmb2, d6nmmc2, d6nmmd2
        automated match to d1knya2
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
    4. Domains for 6nmn:
      1. 3006886Domain d6nmna1: 6nmn A:1-125 [379021]
        Other proteins in same PDB: d6nmna2, d6nmnb2
        automated match to d1knya2
        protein/DNA complex; complexed with a, mg, nmy; mutant
      2. 3006887Domain d6nmnb1: 6nmn B:1-125 [379052]
        Other proteins in same PDB: d6nmna2, d6nmnb2
        automated match to d1knya2
        protein/DNA complex; complexed with a, mg, nmy; mutant
  3. 3006896Staphylococcus aureus [TaxId:1280] [379543] (2 PDB entries)
    1. Domains for 6nlt:
      1. 3006899Domain d6nlta1: 6nlt A:1-125 [379569]
        Other proteins in same PDB: d6nlta2, d6nltb2
        automated match to d1knya2
        complexed with ca; mutant
      2. 3006900Domain d6nltb1: 6nlt B:2-125 [379544]
        Other proteins in same PDB: d6nlta2, d6nltb2
        automated match to d1knya2
        complexed with ca; mutant
    2. Domains for 6un8:
      1. 3006897Domain d6un8a1: 6un8 A:2-125 [385125]
        Other proteins in same PDB: d6un8a2, d6un8b2
        automated match to d1knya2
        complexed with mg, nmy
      2. 3006898Domain d6un8b1: 6un8 B:1-125 [385109]
        Other proteins in same PDB: d6un8a2, d6un8b2
        automated match to d1knya2
        complexed with mg, nmy

More info for Protein automated matches from d.218.1.1: Kanamycin nucleotidyltransferase (KNTase), N-terminal domain

Timeline for Protein automated matches from d.218.1.1: Kanamycin nucleotidyltransferase (KNTase), N-terminal domain: