Lineage for d6pdlf_ (6pdl F:)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2380192Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. 2380193Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. 2381902Family b.6.1.5: Ephrin ectodomain [74874] (3 proteins)
    eukaryotic signaling domain probably related to cupredoxins but lacking the metal-binding site
    automatically mapped to Pfam PF00812
  6. 2381908Protein Ephrin-b2 ectodomain [74875] (2 species)
  7. 2381909Species Human (Homo sapiens) [TaxId:9606] [190026] (4 PDB entries)
  8. 2381914Domain d6pdlf_: 6pdl F: [377476]
    automated match to d3gxub_
    complexed with bma, fuc, man, nag

Details for d6pdlf_

PDB Entry: 6pdl (more details), 2.7 Å

PDB Description: crystal structure of hendra virus attachment g glycoprotein in complex with receptor ephrin-b2
PDB Compounds: (F:) ephrin-b2

SCOPe Domain Sequences for d6pdlf_:

Sequence, based on SEQRES records: (download)

>d6pdlf_ b.6.1.5 (F:) Ephrin-b2 ectodomain {Human (Homo sapiens) [TaxId: 9606]}
sivlepiywnssnskflpgqglvlypqigdkldiicpkvdsktvgqyeyykvymvdkdqa
drctikkentpllncakpdqdikftikfqefspnlwglefqknkdyyiistsngslegld
nqeggvcqtramkilmkvgqd

Sequence, based on observed residues (ATOM records): (download)

>d6pdlf_ b.6.1.5 (F:) Ephrin-b2 ectodomain {Human (Homo sapiens) [TaxId: 9606]}
sivlepiywnssnskflpgqglvlypqigdkldiicpkvqyeyykvymvdkdqadrctik
ntpllncakpdqdikftikfqefspnlwglefqknkdyyiistsngslegldnqeggvcq
tramkilmkvgqd

SCOPe Domain Coordinates for d6pdlf_:

Click to download the PDB-style file with coordinates for d6pdlf_.
(The format of our PDB-style files is described here.)

Timeline for d6pdlf_: