SCOPe 2.06: Domain d1cmxd_: 1cmx D:

Lineage for d1cmxd_ (1cmx D:)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (11 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
   Pfam PF00240

6. Protein Ubiquitin [54238] (8 species)

7. Species Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)

8. Domain d1cmxd_: 1cmx D: [37596]
   Other proteins in same PDB: d1cmxa_, d1cmxc_
   nearly completely disordered chain D in the crystal structure

Details for d1cmxd_

PDB Entry: 1cmx, 2.25 Å

PDB Description: structural basis for the specificity of ubiquitin c-terminal hydrolases

PDB Compounds: (D:) protein (ubiquitin yuh1-ubal)

SCOPe Domain Sequences for d1cmxd_:

Sequence, based on SEQRES records:

>d1cmxd_ d.15.1.1 (D:) Ubiquitin {Synthetic, based on Saccharomyces cerevisiae sequence}
ktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkes
tlhlvlrlrgg

Sequence, based on observed residues (ATOM records):

>d1cmxd_ d.15.1.1 (D:) Ubiquitin {Synthetic, based on Saccharomyces cerevisiae sequence}
ktltgqqrllvlrlrgg

Timeline for d1cmxd_:

• d1cmxd_ first appeared (with stable ids) in SCOP 1.55
  
• d1cmxd_ appears in SCOPe 2.05
  
• d1cmxd_ appears in SCOPe 2.07
  
• d1cmxd_ appears in the current release, SCOPe 2.08