SCOPe 2.08: Domain d6otfa_: 6otf A:

Lineage for d6otfa_ (6otf A:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Snow mountain virus [TaxId:52276] [371166] (2 PDB entries)

8. Domain d6otfa_: 6otf A: [371195]
   automated match to d1ihmb_
   complexed with zn

Details for d6otfa_

PDB Entry: 6otf, 3.1 Å

PDB Description: symmetric reconstruction of human norovirus gii.2 snow mountain virus strain vlp in t=3 symmetry

PDB Compounds: (A:) viral protein 1

SCOPe Domain Sequences for d6otfa_:

Sequence, based on SEQRES records:

>d6otfa_ b.121.4.0 (A:) automated matches {Snow mountain virus [TaxId: 52276]}
vmalepvagaalaapvtgqtniidpwiranfvqapngeftvsprnapgevllnlelgpel
npylahlarmyngyaggmevqvmlagnaftagklvfaavpphfpvenlspqqitmfphvi
idvrtlepvllplpdvrnnffhynqkddpkmrivamlytplrsngsgddvftvscrvltr
pspdfdftylvpptvesktkpftlpiltlgelsnsrfpvsidqmytspnevisvqcqngr
ctldgelqgttqlqvsgicafkgevtahlqdndhlynititnlngspfdpsedipaplgv
pdfqgrvfgvitqrdkqnaagqsqpanrghdavvptytaqytpklgqvqigtwqtddlkv
nqpvkftpvglndtehfnqwvvpryagalnlntnlapsvapvfpgerllffrsylplkgg
ygnpaidcllpqewvqhfyqeaapsmsevalvryinpdtgralfeaklhragfmtvssnt
sapvvvpangyfrfdswvnqfyslapm

Sequence, based on observed residues (ATOM records):

>d6otfa_ b.121.4.0 (A:) automated matches {Snow mountain virus [TaxId: 52276]}
vmalepvagaalaapvtgqtniidpwiranfvqapngeftvsprnapgevllnlelgpel
npylahlarmyngyaggmevqvmlagnaftagklvfaavpphfpvenlspqqitmfphvi
idvrtlepvllplpdvrnnffhynqkddpkmrivamlytplrsnvftvscrvltrpspdf
dftylvpptvesktkpftlpiltlgelsnsrfpvsidqmytspnevisvqcqngrctldg
elqgttqlqvsgicafkgevtahlqdndhlynititnlngspfdpsedipaplgvpdfqg
rvfgvitqrdkqnaagqsqpanrghdavvptytaqytpklgqvqigtwqtddlkvnqpvk
ftpvglndtehfnqwvvpryagalnlntnlapsvapvfpgerllffrsylplkggygnpa
idcllpqewvqhfyqeaapsmsevalvryinpdtgralfeaklhragfmtvssntsapvv
vpangyfrfdswvnqfyslapm

Timeline for d6otfa_:

• d6otfa_ first appeared in SCOPe 2.07