SCOPe 2.08: Domain d6o65b1: 6o65 B:34-331

Lineage for d6o65b1 (6o65 B:34-331)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families)

5. Family c.66.1.17: Spermidine synthase [69557] (3 proteins)
   contains additional N-terminal tetramerisation all-beta domain, res. 1-71

6. Protein Spermidine synthase [69558] (6 species)
   polyamine aminopropyltransferase

7. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [117680] (4 PDB entries)
   Uniprot Q9ZUB3

8. Domain d6o65b1: 6o65 B:34-331 [371098]
   Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
   automated match to d1xj5b_
   complexed with edo, hai, peg, s4m, so4

Details for d6o65b1

PDB Entry: 6o65, 1.8 Å

PDB Description: crystal structure of arabidopsis thaliana spermidine synthase isoform 1 (atspds1) in complex with decarboxylated s-adenosylmethionine and cyclohexylamine

PDB Compounds: (B:) Spermidine synthase 1

SCOPe Domain Sequences for d6o65b1:

Sequence, based on SEQRES records:

>d6o65b1 c.66.1.17 (B:34-331) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
kkepacfstvipgwfsemspmwpgeahslkvekvlfqgksdyqdvivfqsatygkvlvld
gviqlterdecayqemithlplcsipnpkkvlvigggdggvlrevarhasieqidmceid
kmvvdvskqffpdvaigyedprvnlvigdgvaflknaaegsydavivdssdpigpakelf
ekpffqsvaralrpggvvctqaeslwlhmdiiedivsncreifkgsvnyawtsvptypsg
vigfmlcstegpdvdfkhplnpidesssksngplkfynaeihsaafclpsfakkvies

Sequence, based on observed residues (ATOM records):

>d6o65b1 c.66.1.17 (B:34-331) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
kkepacfstvipgwfsemspmwpgeahslkvekvlfqgksdyqdvivfqsatygkvlvld
gviqlterdecayqemithlplcsipnpkkvlvigggdggvlrevarhasieqidmceid
kmvvdvskqffpdvaigyedprvnlvigdgvaflknaaegsydavivdssdpigpakelf
ekpffqsvaralrpggvvctqaeslwlhmdiiedivsncreifkgsvnyawtsvptypsg
vigfmlcstegpdvdfkhplnpingplkfynaeihsaafclpsfakkvies

Timeline for d6o65b1:

• d6o65b1 first appeared in SCOPe 2.07