SCOPe 2.08: Domain d1dkid_: 1dki D:

Lineage for d1dkid_ (1dki D:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.1: Papain-like [54002] (26 proteins)

6. Protein Streptococcal pyrogenic exotoxin B [54035] (1 species)

7. Species Streptococcus pyogenes [TaxId:1314] [54036] (2 PDB entries)
   Uniprot P00788 31-398

8. Domain d1dkid_: 1dki D: [37093]
   zymogen
   complexed with so4; mutant
   has additional insertions and/or extensions that are not grouped together

Details for d1dkid_

PDB Entry: 1dki, 1.6 Å

PDB Description: crystal structure of the zymogen form of streptococcal pyrogenic exotoxin b active site (c47s) mutant

PDB Compounds: (D:) pyrogenic exotoxin b zymogen

SCOPe Domain Sequences for d1dkid_:

Sequence, based on SEQRES records:

>d1dkid_ d.3.1.1 (D:) Streptococcal pyrogenic exotoxin B {Streptococcus pyogenes [TaxId: 1314]}
farnekeakdsaitfiqksaaikagarsaedikldkvnlggelsgsnmyvynistggfvi
vsgdkrspeilgystsgsfdvngkeniasfmesyveqikenkkldstyagtaeikqpvvk
slldskgihynqgnpynlltpviekvkpgeqsfvgqhaatgsvatataqimkyhnypnkg
lkdytytlssnnpyfnhpknlfaaistrqynwnnilptysgresnvqkmaiselmadvgi
svdmdygpssgsagssrvqralkenfgynqsvhqinrgdfskqdweaqidkelsqnqpvy
yqgvgkvgghafvidgadgrnfyhvnwgwggvsdgffrldalnpsalgtgggaggfngyq
savvgikp

Sequence, based on observed residues (ATOM records):

>d1dkid_ d.3.1.1 (D:) Streptococcal pyrogenic exotoxin B {Streptococcus pyogenes [TaxId: 1314]}
farnekeakdsaitfiqkldkvnlggelsgsnmyvynistggfvivsgdkrspeilgyst
sgsfdvngkeniasfmesyveqikenkkldstyagqpvvkslldskgihynqgnpynllt
pviekvkpgeqsfvgqhaatgsvatataqimkyhnypnkglkdytytlssnnpyfnhpkn
lfaaistrqynwnnilptysgresnvqkmaiselmadvgisvdmdygpssgsagssrvqr
alkenfgynqsvhqinrgdfskqdweaqidkelsqnqpvyyqgvgkvgghafvidgadgr
nfyhvnwgwggvsdgffrldalnpyqsavvgikp

Timeline for d1dkid_:

• d1dkid_ first appeared (with stable ids) in SCOP 1.55
  
• d1dkid_ appears in SCOPe 2.07