SCOPe 2.08: Domain d6m9ub_: 6m9u B:

Lineage for d6m9ub_ (6m9u B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.0: automated matches [191313] (1 protein)
   not a true family

6. Protein automated matches [190069] (319 species)
   not a true protein

7. Species Bifidobacterium adolescentis [TaxId:411481] [370577] (2 PDB entries)

8. Domain d6m9ub_: 6m9u B: [370591]
   automated match to d3i3og_
   complexed with cl, edo, imd, ipa, mes, peg, pg4, pge

Details for d6m9ub_

PDB Entry: 6m9u, 2.2 Å

PDB Description: structure of the apo-form of 20beta-hydroxysteroid dehydrogenase from bifidobacterium adolescentis strain l2-32

PDB Compounds: (B:) Oxidoreductase, short chain dehydrogenase/reductase family protein

SCOPe Domain Sequences for d6m9ub_:

Sequence, based on SEQRES records:

>d6m9ub_ c.2.1.0 (B:) automated matches {Bifidobacterium adolescentis [TaxId: 411481]}
tveqifderypldkwkdsnysildkfsmrgrkgfvtgaagglgrnaaaalaqagadvalv
dlpsqedkltelakdmserfgtnvialtcdvtdtvqvaelktqlveqlgtvdfaflnagv
nvpgddqdateevwtrtininlngtyrtgriaheimrehghggsliftaslsghnanymm
gsptpvnaygatkaaimehsrylaaalakdgirsntispgyvwsgifngridmpghdaml
evvpmhrfgtndeiastvlflasdassyvtgtdirvdggysv

Sequence, based on observed residues (ATOM records):

>d6m9ub_ c.2.1.0 (B:) automated matches {Bifidobacterium adolescentis [TaxId: 411481]}
tveqifderypldkwkdsnysildkfsmrgrkgfvtgaagglgrnaaaalaqagadvalv
dlpsqedkltelakdmserfgtnvialtcdvtdtvqvaelktqlveqlgtvdfaflnagv
eevwtrtininlngtyrtgriaheimrehghggsliftaslvnaygatkaaimehsryla
aalakdgirsntispgyvwsgifhdamlevvpmhrfgtndeiastvlflasdassyvtgt
dirvdggysv

Timeline for d6m9ub_:

• d6m9ub_ first appeared in SCOPe 2.07