SCOPe 2.07: Domain d6irka_: 6irk A:

Lineage for d6irka_ (6irk A:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.15: Xylose isomerase-like [51658] (8 families)
   different families share similar but non-identical metal-binding sites

5. Family c.1.15.3: Xylose isomerase [51665] (2 proteins)

6. Protein D-xylose isomerase [51666] (13 species)

7. Species Streptomyces rubiginosus [TaxId:1929] [51670] (89 PDB entries)

8. Domain d6irka_: 6irk A: [369143]
   automated match to d1mnza_
   complexed with mg

Details for d6irka_

PDB Entry: 6irk, 1.75 Å

PDB Description: crystal structure of glucose isomerase by fixed-target serial femtosecond crystallography

PDB Compounds: (A:) xylose isomerase

SCOPe Domain Sequences for d6irka_:

Sequence; same for both SEQRES and ATOM records:

>d6irka_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces rubiginosus [TaxId: 1929]}
yqptpedrftfglwtvgwqgrdpfgdatrraldpvesvrrlaelgahgvtfhdddlipfg
ssdsereehvkrfrqalddtgmkvpmattnlfthpvfkdggftandrdvrryalrktirn
idlavelgaetyvawggregaesggakdvrdaldrmkeafdllgeyvtsqgydirfaiep
kpneprgdillptvghalafierlerpelygvnpevgheqmaglnfphgiaqalwagklf
hidlngqngikydqdlrfgagdlraafwlvdllesagysgprhfdfkpprtedfdgvwas
aagcmrnylilkeraaafradpevqealrasrldelarptaadglqallddrsafeefdv
daaaargmaferldqlamdhllgarg

Timeline for d6irka_:

• d6irka_ is new in SCOPe 2.07-stable
  
• d6irka_ appears in the current release, SCOPe 2.08