Lineage for Species: Dokdonia eikasta [TaxId: 308116]

  1. Root: SCOPe 2.08
  2. 3021034Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. 3022990Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
    core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
  4. 3022991Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families) (S)
    Pfam PF13853. Phylogeny described in PubMed 12761335
  5. 3023317Family f.13.1.0: automated matches [227143] (1 protein)
    not a true family
  6. 3023318Protein automated matches [226845] (25 species)
    not a true protein
  7. 3023325Species Dokdonia eikasta [TaxId:308116] [368258] (36 PDB entries)

PDB entries in Species: Dokdonia eikasta [TaxId: 308116]:

  1. Domain(s) for 3x3b:
  2. Domain(s) for 3x3c:
  3. Domain(s) for 4xtl:
  4. Domain(s) for 4xtn:
    1. 3023378Domain d4xtna_: 4xtn A: [414482]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    2. 3023379Domain d4xtnb1: 4xtn B:3-270 [414483]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    3. 3023380Domain d4xtnc1: 4xtn C:3-271 [414484]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    4. 3023381Domain d4xtnd1: 4xtn D:4-271 [414485]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    5. 3023382Domain d4xtne1: 4xtn E:3-271 [414486]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    6. 3023383Domain d4xtnf1: 4xtn F:3-271 [414487]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    7. 3023384Domain d4xtng1: 4xtn G:4-271 [414488]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    8. 3023385Domain d4xtnh_: 4xtn H: [414489]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    9. 3023386Domain d4xtni1: 4xtn I:4-271 [414490]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
    10. 3023387Domain d4xtnj1: 4xtn J:3-270 [414491]
      automated match to d6rf7a_
      complexed with lfa, mpg, na
  5. Domain(s) for 4xto:
    1. 3023425Domain d4xtoa_: 4xto A: [414492]
      automated match to d6rf7a_
      complexed with lfa, na
    2. 3023426Domain d4xtob_: 4xto B: [414493]
      automated match to d6rf7a_
      complexed with lfa, na
    3. 3023427Domain d4xtoc_: 4xto C: [414494]
      automated match to d6rf7a_
      complexed with lfa, na
    4. 3023428Domain d4xtod_: 4xto D: [414495]
      automated match to d6rf7a_
      complexed with lfa, na
    5. 3023429Domain d4xtoe_: 4xto E: [414496]
      automated match to d6rf7a_
      complexed with lfa, na
  6. Domain(s) for 5jrf:
  7. Domain(s) for 6rew:
    1. 3023347Domain d6rewa_: 6rew A: [416525]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    2. 3023348Domain d6rewb_: 6rew B: [416526]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    3. 3023349Domain d6rewc_: 6rew C: [416527]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    4. 3023350Domain d6rewd_: 6rew D: [416528]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    5. 3023351Domain d6rewe_: 6rew E: [416529]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
  8. Domain(s) for 6rex:
    1. 3023390Domain d6rexa_: 6rex A: [416530]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    2. 3023391Domain d6rexb_: 6rex B: [416531]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    3. 3023392Domain d6rexc_: 6rex C: [416532]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    4. 3023393Domain d6rexd_: 6rex D: [416533]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    5. 3023394Domain d6rexe_: 6rex E: [416534]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
  9. Domain(s) for 6rez:
    1. 3023415Domain d6reza_: 6rez A: [416535]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    2. 3023416Domain d6rezb_: 6rez B: [416536]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    3. 3023417Domain d6rezc_: 6rez C: [416537]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    4. 3023418Domain d6rezd_: 6rez D: [416538]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    5. 3023419Domain d6reze_: 6rez E: [416539]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
  10. Domain(s) for 6rf0:
    1. 3023430Domain d6rf0a_: 6rf0 A: [416540]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    2. 3023431Domain d6rf0b_: 6rf0 B: [416541]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    3. 3023432Domain d6rf0c_: 6rf0 C: [416542]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    4. 3023433Domain d6rf0d_: 6rf0 D: [416543]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
    5. 3023434Domain d6rf0e_: 6rf0 E: [416544]
      automated match to d6rf7a_
      complexed with lfa, na, olc, ret
  11. Domain(s) for 6rf1:
    1. 3023398Domain d6rf1a_: 6rf1 A: [416545]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    2. 3023399Domain d6rf1b_: 6rf1 B: [416546]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    3. 3023400Domain d6rf1c_: 6rf1 C: [416547]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    4. 3023401Domain d6rf1d_: 6rf1 D: [416548]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    5. 3023402Domain d6rf1e_: 6rf1 E: [416549]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
  12. Domain(s) for 6rf3:
    1. 3023361Domain d6rf3a_: 6rf3 A: [416550]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc; mutant
    2. 3023362Domain d6rf3b_: 6rf3 B: [416551]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc; mutant
    3. 3023363Domain d6rf3c_: 6rf3 C: [416552]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc; mutant
    4. 3023364Domain d6rf3d_: 6rf3 D: [416553]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc; mutant
    5. 3023365Domain d6rf3e_: 6rf3 E: [416554]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc; mutant
  13. Domain(s) for 6rf4:
    1. 3023371Domain d6rf4a_: 6rf4 A: [416555]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    2. 3023372Domain d6rf4b_: 6rf4 B: [416556]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    3. 3023373Domain d6rf4c_: 6rf4 C: [416557]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    4. 3023374Domain d6rf4d_: 6rf4 D: [416558]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    5. 3023375Domain d6rf4e_: 6rf4 E: [416559]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
  14. Domain(s) for 6rf5:
  15. Domain(s) for 6rf6:
  16. Domain(s) for 6rf7:
  17. Domain(s) for 6rf9:
  18. Domain(s) for 6rfa:
  19. Domain(s) for 6rfb:
  20. Domain(s) for 6rfc:
  21. Domain(s) for 6tk1:
  22. Domain(s) for 6tk2:
  23. Domain(s) for 6tk3:
  24. Domain(s) for 6tk4:
  25. Domain(s) for 6tk5:
  26. Domain(s) for 6tk6:
  27. Domain(s) for 6tk7:
  28. Domain(s) for 6xyt:
    1. 3023336Domain d6xyta_: 6xyt A: [417170]
      automated match to d6rf7a_
      complexed with bog, gol, lfa, lyr, na, ola, olc
    2. 3023337Domain d6xytb_: 6xyt B: [417171]
      automated match to d6rf7a_
      complexed with bog, gol, lfa, lyr, na, ola, olc
    3. 3023338Domain d6xytc_: 6xyt C: [417172]
      automated match to d6rf7a_
      complexed with bog, gol, lfa, lyr, na, ola, olc
    4. 3023339Domain d6xytd_: 6xyt D: [417173]
      automated match to d6rf7a_
      complexed with bog, gol, lfa, lyr, na, ola, olc
    5. 3023340Domain d6xyte_: 6xyt E: [417174]
      automated match to d6rf7a_
      complexed with bog, gol, lfa, lyr, na, ola, olc
  29. Domain(s) for 6yby:
  30. Domain(s) for 6ybz:
    1. 3023366Domain d6ybza_: 6ybz A: [417179]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    2. 3023367Domain d6ybzb_: 6ybz B: [417180]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    3. 3023368Domain d6ybzc_: 6ybz C: [417181]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    4. 3023369Domain d6ybzd_: 6ybz D: [417182]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    5. 3023370Domain d6ybze_: 6ybz E: [417183]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
  31. Domain(s) for 6yc0:
    1. 3023420Domain d6yc0a_: 6yc0 A: [417184]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    2. 3023421Domain d6yc0b_: 6yc0 B: [417185]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    3. 3023422Domain d6yc0c_: 6yc0 C: [417186]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    4. 3023423Domain d6yc0d_: 6yc0 D: [417187]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    5. 3023424Domain d6yc0e_: 6yc0 E: [417188]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
  32. Domain(s) for 6yc1:
    1. 3023342Domain d6yc1a_: 6yc1 A: [417189]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    2. 3023343Domain d6yc1b_: 6yc1 B: [417190]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    3. 3023344Domain d6yc1c_: 6yc1 C: [417191]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    4. 3023345Domain d6yc1d_: 6yc1 D: [417192]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
    5. 3023346Domain d6yc1e_: 6yc1 E: [417193]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret; mutant
  33. Domain(s) for 6yc2:
    1. 3023403Domain d6yc2a_: 6yc2 A: [417194]
      automated match to d6rf7a_
      complexed with ala, lfa, lyr, na, ola, olc
    2. 3023404Domain d6yc2b_: 6yc2 B: [417195]
      automated match to d6rf7a_
      complexed with ala, lfa, lyr, na, ola, olc
    3. 3023405Domain d6yc2c_: 6yc2 C: [417196]
      automated match to d6rf7a_
      complexed with ala, lfa, lyr, na, ola, olc
    4. 3023406Domain d6yc2d_: 6yc2 D: [417197]
      automated match to d6rf7a_
      complexed with ala, lfa, lyr, na, ola, olc
    5. 3023407Domain d6yc2e_: 6yc2 E: [417198]
      automated match to d6rf7a_
      complexed with ala, lfa, lyr, na, ola, olc
  34. Domain(s) for 6yc3:
    1. 3023329Domain d6yc3a_: 6yc3 A: [417199]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    2. 3023330Domain d6yc3b_: 6yc3 B: [417200]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    3. 3023331Domain d6yc3c_: 6yc3 C: [417201]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    4. 3023332Domain d6yc3d_: 6yc3 D: [417202]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
    5. 3023333Domain d6yc3e_: 6yc3 E: [417203]
      automated match to d6rf7a_
      complexed with bog, lfa, na, olc, ret
  35. Domain(s) for 6yc4:
    1. 3023409Domain d6yc4a_: 6yc4 A: [417204]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    2. 3023410Domain d6yc4b_: 6yc4 B: [417205]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    3. 3023411Domain d6yc4c_: 6yc4 C: [417206]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    4. 3023412Domain d6yc4d_: 6yc4 D: [417207]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
    5. 3023413Domain d6yc4e_: 6yc4 E: [417208]
      automated match to d6rf7a_
      complexed with gol, lfa, na, ola, olc, ret
  36. Domain(s) for 6yt4:
    1. 3023356Domain d6yt4a_: 6yt4 A: [417305]
      automated match to d6rf7a_
      complexed with bog, lfa, na, ola, olc, ret; mutant
    2. 3023357Domain d6yt4b_: 6yt4 B: [417306]
      automated match to d6rf7a_
      complexed with bog, lfa, na, ola, olc, ret; mutant
    3. 3023358Domain d6yt4c_: 6yt4 C: [417307]
      automated match to d6rf7a_
      complexed with bog, lfa, na, ola, olc, ret; mutant
    4. 3023359Domain d6yt4d_: 6yt4 D: [417308]
      automated match to d6rf7a_
      complexed with bog, lfa, na, ola, olc, ret; mutant
    5. 3023360Domain d6yt4e_: 6yt4 E: [417309]
      automated match to d6rf7a_
      complexed with bog, lfa, na, ola, olc, ret; mutant

More info for Species Dokdonia eikasta [TaxId:308116] from f.13.1.0 automated matches

Timeline for Species Dokdonia eikasta [TaxId:308116] from f.13.1.0 automated matches: