SCOPe 2.08: Domain d6hkvb_: 6hkv B:

Lineage for d6hkvb_ (6hkv B:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (13 species)
   not a true protein

7. Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] [275642] (6 PDB entries)

8. Domain d6hkvb_: 6hkv B: [366818]
   automated match to d4u62a_
   complexed with cl, gol, gxb, mg

Details for d6hkvb_

PDB Entry: 6hkv, 1.75 Å

PDB Description: trichodysplasia spinulosa-associated polyomavirus (tspyv) vp1 in complex with sialylated precision glycooligomers

PDB Compounds: (B:) Capsid protein VP1

SCOPe Domain Sequences for d6hkvb_:

Sequence, based on SEQRES records:

>d6hkvb_ b.121.6.1 (B:) automated matches {Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]}
nievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeipty
starinlpmlnedltsntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegm
nfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpv
ecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccd
ivgflvgkdgdmqyrglpryfnillrkrtvr

Sequence, based on observed residues (ATOM records):

>d6hkvb_ b.121.6.1 (B:) automated matches {Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]}
nievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeipty
starinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfa
vggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpd
psknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflv
gkdgdmqyrglpryfnillrkrtvr

Timeline for d6hkvb_:

• d6hkvb_ first appeared in SCOPe 2.07