SCOPe 2.07: Domain d6nicd_: 6nic D:

Lineage for d6nicd_ (6nic D:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (8 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (3 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

6. Protein automated matches [190353] (3 species)
   not a true protein

7. Species Medicago truncatula [TaxId:3880] [366571] (2 PDB entries)

8. Domain d6nicd_: 6nic D: [366589]
   automated match to d1vkpb_
   complexed with edo, kqy, na, peg, pge

Details for d6nicd_

PDB Entry: 6nic, 2.2 Å

PDB Description: crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide

PDB Compounds: (D:) Porphyromonas-type peptidyl-arginine deiminase

SCOPe Domain Sequences for d6nicd_:

Sequence, based on SEQRES records:

>d6nicd_ d.126.1.6 (D:) automated matches {Medicago truncatula [TaxId: 3880]}
hgfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwe
narnqlpdhvrvveissndswfrdigptfvvrretsksddaehriagidwtfnswggled
gcycdwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphl
sksqiedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqy
erseeayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaas
yvnfyiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqq
qpai

Sequence, based on observed residues (ATOM records):

>d6nicd_ d.126.1.6 (D:) automated matches {Medicago truncatula [TaxId: 3880]}
hgfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwe
narnqlpdhvrvveissndswfrdigptfvvrretdaehriagidwtfnswggledgcyc
dwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphlsksq
iedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqyerse
eayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaasyvnf
yiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqqqpai

Timeline for d6nicd_:

• d6nicd_ is new in SCOPe 2.07-stable
  
• d6nicd_ appears in the current release, SCOPe 2.08