SCOPe 2.07: Domain d6nicb_: 6nic B:

Lineage for d6nicb_ (6nic B:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (8 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (3 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

6. Protein automated matches [190353] (3 species)
   not a true protein

7. Species Medicago truncatula [TaxId:3880] [366571] (2 PDB entries)

8. Domain d6nicb_: 6nic B: [366572]
   automated match to d1vkpb_
   complexed with edo, kqy, na, peg, pge

Details for d6nicb_

PDB Entry: 6nic, 2.2 Å

PDB Description: crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide

PDB Compounds: (B:) Porphyromonas-type peptidyl-arginine deiminase

SCOPe Domain Sequences for d6nicb_:

Sequence, based on SEQRES records:

>d6nicb_ d.126.1.6 (B:) automated matches {Medicago truncatula [TaxId: 3880]}
gfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwen
arnqlpdhvrvveissndswfrdigptfvvrretsksddaehriagidwtfnswggledg
cycdwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphls
ksqiedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqye
rseeayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaasy
vnfyiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqqq
pai

Sequence, based on observed residues (ATOM records):

>d6nicb_ d.126.1.6 (B:) automated matches {Medicago truncatula [TaxId: 3880]}
gfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwen
arnqlpdhvrvveissndswfrdigptfvvrreehriagidwtfnswggledgcycdwsl
dslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphlsksqiede
lkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqyerseeays
lfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaasyvnfyian
gaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqqqpai

Timeline for d6nicb_:

• d6nicb_ is new in SCOPe 2.07-stable
  
• d6nicb_ appears in the current release, SCOPe 2.08