Lineage for d6dyua1 (6dyu A:1-230)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2495627Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2495644Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 2496659Family c.56.2.0: automated matches [191488] (1 protein)
    not a true family
  6. 2496660Protein automated matches [190781] (45 species)
    not a true protein
  7. 2496905Species Helicobacter pylori [TaxId:85962] [227827] (10 PDB entries)
  8. 2496913Domain d6dyua1: 6dyu A:1-230 [366388]
    Other proteins in same PDB: d6dyua2, d6dyub2
    automated match to d4bn0b_
    complexed with edo, nh4, os2

Details for d6dyua1

PDB Entry: 6dyu (more details), 1.6 Å

PDB Description: crystal structure of helicobacter pylori 5'-methylthioadenosine/s- adenosyl homocysteine nucleosidase (mtan) complexed with (3r,4s)-1- ((4-amino-5h-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-((prop-2-yn-1- ylthio)methyl)pyrrolidin-3-ol
PDB Compounds: (A:) 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

SCOPe Domain Sequences for d6dyua1:

Sequence; same for both SEQRES and ATOM records: (download)

>d6dyua1 c.56.2.0 (A:1-230) automated matches {Helicobacter pylori [TaxId: 85962]}
vqkigilgamreeitpilelfgvdfeeiplggnvfhkgvyhnkeiivayskigkvhstlt
ttsmilafgvqkvlfsgvagslvkdlkindllvatqlvqhdvdlsafdhplgfipesaif
ietsgslnalakkianeqhialkegviasgdqfvhskerkeflvsefkasavemegasva
fvcqkfgvpccvlrsisdnadekagmsfdefleksahtsakflksmvdel

SCOPe Domain Coordinates for d6dyua1:

Click to download the PDB-style file with coordinates for d6dyua1.
(The format of our PDB-style files is described here.)

Timeline for d6dyua1:

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Domains from same chain:
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d6dyua2