SCOPe 2.08: Domain d6iija_: 6iij A:

Lineage for d6iija_ (6iij A:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Coxsackievirus a10 [TaxId:42769] [359971] (7 PDB entries)

8. Domain d6iija_: 6iij A: [359972]
   Other proteins in same PDB: d6iijc_
   automated match to d4cdqa_
   complexed with sph

Details for d6iija_

PDB Entry: 6iij, 2.84 Å

PDB Description: cryo-em structure of cv-a10 mature virion

PDB Compounds: (A:) vp1

SCOPe Domain Sequences for d6iija_:

Sequence, based on SEQRES records:

>d6iija_ b.121.4.0 (A:) automated matches {Coxsackievirus a10 [TaxId: 42769]}
dpvediihdalgntarraisgatnvesaadttpsshrletgrvpalqaaetgatsnatde
nmietrcvinrngvlettinhffsrsglvgvvnltdggdttgyatwdidimgfvqlrrkc
emftymrfnaeftfvtttksgearpymlqymyvppgapkptgrdafqwqtatnpsvfvkl
tdppaqvsvpfmspasayqwfydgyptfgqhpetsnttyglcpnnmmgtfavrvvsreas
qlklqtrvymklkhvrawvprpirsqpyllknfpnydsskitnsardrssikqan

Sequence, based on observed residues (ATOM records):

>d6iija_ b.121.4.0 (A:) automated matches {Coxsackievirus a10 [TaxId: 42769]}
dpvediihraisgatnvesaadttpsshrletgrvpalqaaetgatsnatdenmietrcv
inrngvlettinhffsrsglvgvvnltdggdttgyatwdidimgfvqlrrkcemftymrf
naeftfvtttksgearpymlqymyvppgapkptgrdafqwqtatnpsvfvkltdppaqvs
vpfmspasayqwfydgyptfgqhpetsnttyglcpnnmmgtfavrvvsreasqlklqtrv
ymklkhvrawvprpirsqpyllknfpnydsskitnsardrssikqan

Timeline for d6iija_:

• d6iija_ first appeared in SCOPe 2.07