Lineage for d1ypna1 (1ypn A:3-219)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2485906Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2485907Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2485908Family c.94.1.1: Phosphate binding protein-like [53851] (45 protein domains)
  6. 2486785Protein Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain [53854] (1 species)
  7. 2486786Species Escherichia coli [TaxId:562] [53855] (5 PDB entries)
  8. 2486790Domain d1ypna1: 1ypn A:3-219 [35754]
    Other proteins in same PDB: d1ypna2
    complexed with dpm; mutant

Details for d1ypna1

PDB Entry: 1ypn (more details), 2.3 Å

PDB Description: reduced form hydroxymethylbilane synthase (k59q mutant) crystal structure after 2 hours in a flow cell determined by time-resolved laue diffraction
PDB Compounds: (A:) hydroxymethylbilane synthase

SCOPe Domain Sequences for d1ypna1:

Sequence, based on SEQRES records: (download)

>d1ypna1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]}

Sequence, based on observed residues (ATOM records): (download)

>d1ypna1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]}

SCOPe Domain Coordinates for d1ypna1:

Click to download the PDB-style file with coordinates for d1ypna1.
(The format of our PDB-style files is described here.)

Timeline for d1ypna1:

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