SCOPe 2.02: Domain d2dria_: 2dri A:

Lineage for d2dria_ (2dri A:)

1. Root: SCOPe 2.02

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.1: L-arabinose binding protein-like [53823] (17 proteins)

6. Protein D-ribose-binding protein [53824] (1 species)

7. Species Escherichia coli, strain k-12 [TaxId:562] [53825] (6 PDB entries)

8. Domain d2dria_: 2dri A: [35637]
   complexed with rip

Details for d2dria_

PDB Entry: 2dri, 1.6 Å

PDB Description: probing protein-protein interactions: the ribose binding protein in bacterial transport and chemotaxis

PDB Compounds: (A:) d-ribose-binding protein

SCOPe Domain Sequences for d2dria_:

Sequence; same for both SEQRES and ATOM records:

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
kdtialvvstlnnpffvslkdgaqkeadklgynlvvldsqnnpakelanvqdltvrgtki
llinptdsdavgnavkmanqanipvitldrqatkgevvshiasdnvlggkiagdyiakka
gegakvielqgiagtsaarergegfqqavaahkfnvlasqpadfdrikglnvmqnlltah
pdvqavfaqndemalgalralqtagksdvmvvgfdgtpdgekavndgklaatiaqlpdqi
gakgvetadkvlkgekvqakypvdlklvvkq

Timeline for d2dria_:

• d2dria_ first appeared (with stable ids) in SCOP 1.55, called d2dri__
  
• d2dria_ appears in SCOPe 2.01
  
• d2dria_ appears in SCOPe 2.03
  
• d2dria_ appears in the current release, SCOPe 2.08