Lineage for Species: Sphingobium herbicidovorans [TaxId: 76947]

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2404605Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2405395Family b.82.2.0: automated matches [191672] (1 protein)
    not a true family
  6. 2405396Protein automated matches [191281] (16 species)
    not a true protein
  7. 3055931Species Sphingobium herbicidovorans [TaxId:76947] [355993] (3 PDB entries)

PDB entries in Species: Sphingobium herbicidovorans [TaxId: 76947]:

  1. Domain(s) for 6d3h:
    1. 3055946Domain d6d3hi_: 6d3h I: [356008]
      automated match to d1otjb_
      complexed with akg, cl, co, ftv
    2. 3055963Domain d6d3hb_: 6d3h B: [356025]
      automated match to d1otjb_
      complexed with akg, cl, co, ftv
    3. 3055964Domain d6d3hm_: 6d3h M: [356026]
      automated match to d1otjb_
      complexed with akg, cl, co, ftv
    4. 3056075Domain d6d3ha_: 6d3h A: [356137]
      automated match to d1otjb_
      complexed with akg, cl, co, ftv
  2. Domain(s) for 6d3j:
  3. Domain(s) for 6d3m:
    1. 3055983Domain d6d3mf_: 6d3m F: [356045]
      automated match to d1otjb_
      complexed with akg, cl, co, ftj
    2. 3056057Domain d6d3mb_: 6d3m B: [356119]
      automated match to d1otjb_
      complexed with akg, cl, co, ftj
    3. 3056066Domain d6d3ma_: 6d3m A: [356128]
      automated match to d1otjb_
      complexed with akg, cl, co, ftj
    4. 3056087Domain d6d3mj_: 6d3m J: [356149]
      automated match to d1otjb_
      complexed with akg, cl, co, ftj

More info for Species Sphingobium herbicidovorans [TaxId:76947] from b.82.2.0 automated matches

Timeline for Species Sphingobium herbicidovorans [TaxId:76947] from b.82.2.0 automated matches:

  • Species Sphingobium herbicidovorans [TaxId:76947] from b.82.2.0 automated matches appears in periodic updates to SCOPe 2.07 starting on 2018-08-15