Lineage for Species: Marine metagenome [TaxId: 408172]

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2418840Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2418841Protein automated matches [190075] (103 species)
    not a true protein
  7. 3055723Species Marine metagenome [TaxId:408172] [355785] (2 PDB entries)

PDB entries in Species: Marine metagenome [TaxId: 408172]:

  1. Domain(s) for 5ns7:
    1. 3055724Domain d5ns7b1: 5ns7 B:2-439 [355786]
      Other proteins in same PDB: d5ns7a2, d5ns7b2, d5ns7c2
      automated match to d1uz1b_
      complexed with gol, so4; mutant
    2. 3055782Domain d5ns7c1: 5ns7 C:2-439 [355844]
      Other proteins in same PDB: d5ns7a2, d5ns7b2, d5ns7c2
      automated match to d1uz1b_
      complexed with gol, so4; mutant
    3. 3055811Domain d5ns7a1: 5ns7 A:2-439 [355873]
      Other proteins in same PDB: d5ns7a2, d5ns7b2, d5ns7c2
      automated match to d1uz1b_
      complexed with gol, so4; mutant
  2. Domain(s) for 5ns8:
    1. 3055751Domain d5ns8c1: 5ns8 C:2-439 [355813]
      Other proteins in same PDB: d5ns8a2, d5ns8b2, d5ns8c2
      automated match to d1uz1b_
      complexed with gol, noj, so4; mutant
    2. 3055755Domain d5ns8a1: 5ns8 A:2-439 [355817]
      Other proteins in same PDB: d5ns8a2, d5ns8b2, d5ns8c2
      automated match to d1uz1b_
      complexed with gol, noj, so4; mutant
    3. 3055880Domain d5ns8b1: 5ns8 B:2-439 [355942]
      Other proteins in same PDB: d5ns8a2, d5ns8b2, d5ns8c2
      automated match to d1uz1b_
      complexed with gol, noj, so4; mutant

More info for Species Marine metagenome [TaxId:408172] from c.1.8.0 automated matches

Timeline for Species Marine metagenome [TaxId:408172] from c.1.8.0 automated matches:

  • Species Marine metagenome [TaxId:408172] from c.1.8.0 automated matches appears in periodic updates to SCOPe 2.07 starting on 2018-08-09