SCOP 1.73: Domain d1pygd_: 1pyg D:

Lineage for d1pygd_ (1pyg D:)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
   consists of two non-similar domains with 3 layers (a/b/a) each
   domain 1: parallel beta-sheet of 7 strands, order 3214567
   domain 2: parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (9 families)

5. Family c.87.1.4: Oligosaccharide phosphorylase [53766] (2 proteins)

6. Protein Glycogen phosphorylase [53767] (3 species)
   both domains are elaborated with many insertions

7. Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [53769] (86 PDB entries)

8. Domain d1pygd_: 1pyg D: [35535]
   complexed with amp, pdp

Details for d1pygd_

PDB Entry: 1pyg, 2.87 Å

PDB Description: structural basis for the activation of glycogen phosphorylase b by adenosine monophosphate

PDB Compounds: (D:) glycogen phosphorylase b

SCOP Domain Sequences for d1pygd_:

Sequence, based on SEQRES records:

>d1pygd_ c.87.1.4 (D:) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
rkqisvrglagvenvtelkknfnrhlhftlvkdrnvatprdyyfalahtvrdhlvgrwir
tqqhyyekdpkriyylslefymgrtlqntmvnlalenacdeatyqlgldmeeleeieeda
glgngglgrlaacfldsmatlglaaygygiryefgifnqkicggwqmeeaddwlrygnpw
ekarpeftlpvhfygrvehtsqgakwvdtqvvlampydtpvpgyrnnvvntmrlwsakap
ndfnlkdfnvggyiqavldrnlaenisrvlypndnffegkelrlkqeyfvvaatlqdiir
rfksskfgcrdpvrtnfdafpdkvaiqlndthpslaipelmrvlvdlerldwdkawevtv
ktcaytnhtvlpealerwpvhlletllprhlqiiyeinqrflnrvaaafpgdvdrlrrms
lveegavkrinmahlciagshavngvarihseilkktifkdfyelephkfqnktngitpr
rwlvlcnpglaeiiaerigeeyisdldqlrkllsyvddeafirdvakvkqenklkfaayl
ereykvhinpnslfdvqvkriheykrqllnclhvitlynrikkepnkfvvprtvmiggka
apgyhmakmiiklitaigdvvnhdpvvgdrlrviflenyrvslaekvipaadlseqista
gteasgtgnmkfmlngaltigtmdganvemaeeageenffifgmrvedvdrldqrgynaq
eyydripelrqiieqlssgffspkqpdlfkdivnmlmhhdrfkvfadyeeyvkcqervsa
lyknprewtrmvirniatsgkfssdrtiaqyareiwgvepsrqrlpa

Sequence, based on observed residues (ATOM records):

>d1pygd_ c.87.1.4 (D:) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
rkqisvrglagvenvtelkknfnrhlhftlvkdrnvatprdyyfalahtvrdhlvgrwir
tqqhyyekdpkriyylslefymgrtlqntmvnlalenacdeatyqlgldmeeleeieeda
glgngglgrlaacfldsmatlglaaygygiryefgifnqkicggwqmeeaddwlrygnpw
ekarpeftlpvhfygrvehtsqgakwvdtqvvlampydtpvpgyrnnvvntmrlwsakap
qavldrnlaeniskelrlkqeyfvvaatlqdiirrfksskfgcrdpvrtnfdafpdkvai
qlndthpslaipelmrvlvdlerldwdkawevtvktcaytnhtvlpealerwpvhlletl
lprhlqiiyeinqrflnrvaaafpgdvdrlrrmslveegavkrinmahlciagshavngv
arihseilkktifkdfyelephkfqnktngitprrwlvlcnpglaeiiaerigeeyisdl
dqlrkllsyvddeafirdvakvkqenklkfaaylereykvhinpnslfdvqvkriheykr
qllnclhvitlynrikkepnkfvvprtvmiggkaapgyhmakmiiklitaigdvvnhdpv
vgdrlrviflenyrvslaekvipaadlseqistagteasgtgnmkfmlngaltigtmdga
nvemaeeageenffifgmrvedvdrldqrgynaqeyydripelrqiieqlssgffspkqp
dlfkdivnmlmhhdrfkvfadyeeyvkcqervsalyknprewtrmvirniatsgkfssdr
tiaqyareiwgvepsrqrlpa

Timeline for d1pygd_:

• d1pygd_ first appeared (with stable ids) in SCOP 1.55
  
• d1pygd_ appears in SCOP 1.71
  
• d1pygd_ appears in SCOP 1.75
  
• d1pygd_ appears in the current release, SCOPe 2.08