Lineage for d1pygb_ (1pyg B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142044Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2142045Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2142109Family c.87.1.4: Oligosaccharide phosphorylase [53766] (3 protein domains)
    automatically mapped to Pfam PF00343
  6. 2142110Protein Glycogen phosphorylase [53767] (3 species)
    both domains are elaborated with many insertions
  7. 2142145Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [53769] (74 PDB entries)
    Uniprot P00489 ! Uniprot P00489
  8. 2142214Domain d1pygb_: 1pyg B: [35533]
    complexed with amp, pdp

Details for d1pygb_

PDB Entry: 1pyg (more details), 2.87 Å

PDB Description: structural basis for the activation of glycogen phosphorylase b by adenosine monophosphate
PDB Compounds: (B:) glycogen phosphorylase b

SCOPe Domain Sequences for d1pygb_:

Sequence, based on SEQRES records: (download)

>d1pygb_ c.87.1.4 (B:) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
gvenvtelkknfnrhlhftlvkdrnvatprdyyfalahtvrdhlvgrwirtqqhyyekdp
kriyylslefymgrtlqntmvnlalenacdeatyqlgldmeeleeieedaglgngglgrl
aacfldsmatlglaaygygiryefgifnqkicggwqmeeaddwlrygnpwekarpeftlp
vhfygrvehtsqgakwvdtqvvlampydtpvpgyrnnvvntmrlwsakapndfnlkdfnv
ggyiqavldrnlaenisrvlypndnffegkelrlkqeyfvvaatlqdiirrfksskfgcr
dpvrtnfdafpdkvaiqlndthpslaipelmrvlvdlerldwdkawevtvktcaytnhtv
lpealerwpvhlletllprhlqiiyeinqrflnrvaaafpgdvdrlrrmslveegavkri
nmahlciagshavngvarihseilkktifkdfyelephkfqnktngitprrwlvlcnpgl
aeiiaerigeeyisdldqlrkllsyvddeafirdvakvkqenklkfaaylereykvhinp
nslfdvqvkriheykrqllnclhvitlynrikkepnkfvvprtvmiggkaapgyhmakmi
iklitaigdvvnhdpvvgdrlrviflenyrvslaekvipaadlseqistagteasgtgnm
kfmlngaltigtmdganvemaeeageenffifgmrvedvdrldqrgynaqeyydripelr
qiieqlssgffspkqpdlfkdivnmlmhhdrfkvfadyeeyvkcqervsalyknprewtr
mvirniatsgkfssdrtiaqyareiwgvepsrqrlpa

Sequence, based on observed residues (ATOM records): (download)

>d1pygb_ c.87.1.4 (B:) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
gvenvtelkknfnrhlhftlvkdrnvatprdyyfalahtvrdhlvgrwirtqqhyyekdp
kriyylslefymgrtlqntmvnlalenacdeatyqlgldmeeleeieedaglgngglgrl
aacfldsmatlglaaygygiryefgifnqkicggwqmeeaddwlrygnpwekarpeftlp
vhfygrvehtsqgakwvdtqvvlampydtpvpgyrnnvvntmrlwsakapqavldrnlae
niskelrlkqeyfvvaatlqdiirrfksskfgcrdpvrtnfdafpdkvaiqlndthpsla
ipelmrvlvdlerldwdkawevtvktcaytnhtvlpealerwpvhlletllprhlqiiye
inqrflnrvaaafpgdvdrlrrmslveegavkrinmahlciagshavngvarihseilkk
tifkdfyelephkfqnktngitprrwlvlcnpglaeiiaerigeeyisdldqlrkllsyv
ddeafirdvakvkqenklkfaaylereykvhinpnslfdvqvkriheykrqllnclhvit
lynrikkepnkfvvprtvmiggkaapgyhmakmiiklitaigdvvnhdpvvgdrlrvifl
enyrvslaekvipaadlseqistagteasgtgnmkfmlngaltigtmdganvemaeeage
enffifgmrvedvdrldqrgynaqeyydripelrqiieqlssgffspkqpdlfkdivnml
mhhdrfkvfadyeeyvkcqervsalyknprewtrmvirniatsgkfssdrtiaqyareiw
gvepsrqrlpa

SCOPe Domain Coordinates for d1pygb_:

Click to download the PDB-style file with coordinates for d1pygb_.
(The format of our PDB-style files is described here.)

Timeline for d1pygb_: