SCOPe 2.05: Domain d9gpbd_: 9gpb D:

Lineage for d9gpbd_ (9gpb D:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
   consists of two non-similar domains with 3 layers (a/b/a) each
   domain 1: parallel beta-sheet of 7 strands, order 3214567
   domain 2: parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (13 families)

5. Family c.87.1.4: Oligosaccharide phosphorylase [53766] (3 proteins)
   automatically mapped to Pfam PF00343

6. Protein Glycogen phosphorylase [53767] (3 species)
   both domains are elaborated with many insertions

7. Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [53769] (69 PDB entries)
   Uniprot P00489 ! Uniprot P00489

8. Domain d9gpbd_: 9gpb D: [35527]
   complexed with plp, so4

Details for d9gpbd_

PDB Entry: 9gpb, 2.9 Å

PDB Description: the allosteric transition of glycogen phosphorylase

PDB Compounds: (D:) glycogen phosphorylase b

SCOPe Domain Sequences for d9gpbd_:

Sequence, based on SEQRES records:

>d9gpbd_ c.87.1.4 (D:) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
rkqisvrglagvenvtelkknfnrhlhftlvkdrnvatprdyyfalahtvrdhlvgrwir
tqqhyyekdpkriyylslefymgrtlqntmvnlalenacdeatyqlgldmeeleeieeda
glgngglgrlaacfldsmatlglaaygygiryefgifnqkicggwqmeeaddwlrygnpw
ekarpeftlpvhfygrvehtsqgakwvdtqvvlampydtpvpgyrnnvvntmrlwsakap
ndfnlkdfnvggyiqavldrnlaenisrvlypndnffegkelrlkqeyfvvaatlqdiir
rfksskfgcrdpvrtnfdafpdkvaiqlndthpslaipelmrvlvdlerldwdkawevtv
ktcaytnhtvipealerwpvhlletllprhlqiiyeinqrflnrvaaafpgdvdrlrrms
lveegavkrinmahlciagshavngvarihseilkktifkdfyelephkfqnktngitpr
rwlvlcnpglaeiiaerigeeyisdldqlrkllsyvddeafirdvakvkqenklkfaayl
ereykvhinpnslfdvqvkriheykrqllnclhvitlynrikkepnkfvvprtvmiggka
apgyhmakmiiklitaigdvvnhdpvvgdrlrviflenyrvslaekvipaadlseqista
gteasgtgnmkfmlngaltigtmdganvemaeeageenffifgmrvedvdrldqrgynaq
eyydripelrqiieqlssgffspkqpdlfkdivnmlmhhdrfkvfadyeeyvkcqervsa
lyknprewtrmvirniatsgkfssdrtiaqyareiwgvepsrqrlpap

Sequence, based on observed residues (ATOM records):

>d9gpbd_ c.87.1.4 (D:) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
rkqisvrglagvenvtelkknfnrhlhftlvkdrnvatprdyyfalahtvrdhlvgrwir
tqqhyyekdpkriyylslefymgrtlqntmvnlalenacdeatyqlgldmeeleeieeda
glgngglgrlaacfldsmatlglaaygygiryefgifnqkicggwqmeeaddwlrygnpw
ekarpeftlpvhfygrvehtsqgakwvdtqvvlampydtpvpgyrnnvvntmrlwsakap
ndfnlkdfnvggyiqavldrnlaenisrvlypegkelrlkqeyfvvaatlqdiirrfkss
kfgcrdpvrtnfdafpdkvaiqlndthpslaipelmrvlvdlerldwdkawevtvktcay
tnhtvipealerwpvhlletllprhlqiiyeinqrflnrvaaafpgdvdrlrrmslveeg
avkrinmahlciagshavngvarihseilkktifkdfyelephkfqnktngitprrwlvl
cnpglaeiiaerigeeyisdldqlrkllsyvddeafirdvakvkqenklkfaaylereyk
vhinpnslfdvqvkriheykrqllnclhvitlynrikkepnkfvvprtvmiggkaapgyh
makmiiklitaigdvvnhdpvvgdrlrviflenyrvslaekvipaadlseqistagteas
gtgnmkfmlngaltigtmdganvemaeeageenffifgmrvedvdrldqrgynaqeyydr
ipelrqiieqlssgffspkqpdlfkdivnmlmhhdrfkvfadyeeyvkcqervsalyknp
rewtrmvirniatsgkfssdrtiaqyareiwgvepsrqrlpap

Timeline for d9gpbd_:

• d9gpbd_ first appeared (with stable ids) in SCOP 1.55
  
• d9gpbd_ appears in SCOPe 2.04
  
• d9gpbd_ appears in SCOPe 2.06
  
• d9gpbd_ appears in the current release, SCOPe 2.08