Lineage for d5xppa_ (5xpp A:)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2335122Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2335123Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2335124Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)
  6. 2336099Protein Vitamin D nuclear receptor [48528] (2 species)
  7. 2336128Species Norway rat (Rattus norvegicus) [TaxId:10116] [101432] (25 PDB entries)
  8. 3053296Domain d5xppa_: 5xpp A: [353358]
    automated match to d1ie9a_
    complexed with 8bf

Details for d5xppa_

PDB Entry: 5xpp (more details), 2.85 Å

PDB Description: crystal structure of vdr-lbd complexed with 25rs-(hydroxyphenyl)-2- methylidene-19,26,27-trinor-1,25-dihydroxyvitamin d3
PDB Compounds: (A:) Vitamin D3 receptor

SCOPe Domain Sequences for d5xppa_:

Sequence, based on SEQRES records: (download)

>d5xppa_ a.123.1.1 (A:) Vitamin D nuclear receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}
klseeqqhiiailldahhktydptyadfrdfrppvrmdgstgsvtldlsplsmlphladl
vsysiqkvigfakmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdy
kydvtdvskaghtlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklve
aiqdrlsntlqtyircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmk
ltplvlevfg

Sequence, based on observed residues (ATOM records): (download)

>d5xppa_ a.123.1.1 (A:) Vitamin D nuclear receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}
klseeqqhiiailldahhktydptyadfrdfrppvrmsplsmlphladlvsysiqkvigf
akmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdykydvtdvskag
htlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklveaiqdrlsntlq
tyircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmkltplvlevfg

SCOPe Domain Coordinates for d5xppa_:

Click to download the PDB-style file with coordinates for d5xppa_.
(The format of our PDB-style files is described here.)

Timeline for d5xppa_:

  • d5xppa_ appears in periodic updates to SCOPe 2.07 starting on 2018-06-07