SCOPe 2.07: Domain d2dmra2: 2dmr A:3-625

Lineage for d2dmra2 (2dmr A:3-625)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (2 families)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

6. Protein Dimethylsulfoxide reductase (DMSO reductase) [53708] (2 species)

7. Species Rhodobacter capsulatus [TaxId:1061] [53710] (10 PDB entries)

8. Domain d2dmra2: 2dmr A:3-625 [35323]
   Other proteins in same PDB: d2dmra1
   complexed with 4mo, o, pgd, so2

Details for d2dmra2

PDB Entry: 2dmr, 2.8 Å

PDB Description: dithionite reduced dmso reductase from rhodobacter capsulatus

PDB Compounds: (A:) dmso reductase

SCOPe Domain Sequences for d2dmra2:

Sequence, based on SEQRES records:

>d2dmra2 c.81.1.1 (A:3-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter capsulatus [TaxId: 1061]}
langtvmsgshwgvftatvengrataftpwekdphpspmlagvldsiysptrikypmvrr
eflekgvnadrstrgngdfvrvswdqaldlvaaevkrveetygpegvfggsygwkspgrl
hncttllrrmltlaggyvngagdystgaaqvimphvvgtlevyeqqtawpvlaentevmv
fwaadpiktsqigwvipehgaypglealkakgtkvividpvrtktveffgaehitpkpqt
dvaimlgmahtlvaedlydkdfianytsgfdkflpyldgetdstpktaewaegisgvpae
tikelarlfeskrtmlaagwsmqrmhhgeqahwmlvtlasmlgqiglpgggfglsyhysg
ggtpstsgpalagitdggaatkgpewlaasgasvipvarvvdmlenpgaefdfngtrskf
pdvkmaywvggnpfvhhqdrnrmvkawekletfvvhdfqwtptarhadivlpattsyern
dietigdysntgilamkkiveplyearsdydifaavaerlgkgaeftegkdemgwiksfy
ddaakqgkaagvqmpafdafwaegivefpvtdgadfvryasfredpllnplgtptgliei
yskniekmgyddcpahptwmepl

Sequence, based on observed residues (ATOM records):

>d2dmra2 c.81.1.1 (A:3-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter capsulatus [TaxId: 1061]}
langtvmsgshwgvftatvengrataftpwekdphpspmlagvldsiysptrikypmvrr
eflekgvnadrstrgngdfvrvswdqaldlvaaevkrveetygpegvfggsygwkspgrl
hncttllrrmltlaggyvngagdystgaaqvimphvvgtlevyeqqtawpvlaentevmv
fwaadpiktsqigwvipehgaypglealkakgtkvividpvrtktveffgaehitpkpqt
dvaimlgmahtlvaedlydkdfianytsgfdkflpyldgetdstpktaewaegisgvpae
tikelarlfeskrtmlaagwsmqrmhhgeqahwmlvtlasmlgqiglpgggfglsyhysg
ggtpstsgpalagitdggaatkgasvipvarvvdmlenpgaefdfngtrskfpdvkmayw
vggnpfvhhqdrnrmvkawekletfvvhdfqwtptarhadivlpattsyerndietigdy
sntgilamkkiveplyearsdydifaavaerlgkgaeftegkdemgwiksfyddaakqgk
aagvqmpafdafwaegivefpvtdgadfvryasfredpllnplgtptglieiyskniekm
gyddcpahptwmepl

Timeline for d2dmra2:

• d2dmra2 first appeared (with stable ids) in SCOP 1.55, called d2dmr_2
  
• d2dmra2 appears in SCOPe 2.06
  
• d2dmra2 appears in the current release, SCOPe 2.08