SCOPe 2.07: Domain d6ex9a_: 6ex9 A:

Lineage for d6ex9a_ (6ex9 A:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (16 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)

6. Protein Retroviral integrase, catalytic domain [53108] (4 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (73 PDB entries)

8. Domain d6ex9a_: 6ex9 A: [353186]
   automated match to d1exqa_

Details for d6ex9a_

PDB Entry: 6ex9, 2.01 Å

PDB Description: crystal structure of hiv-1 integrase catalytic core domain with inhibitor peptide

PDB Compounds: (A:) integrase

SCOPe Domain Sequences for d6ex9a_:

Sequence, based on SEQRES records:

>d6ex9a_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktihtd
ngsnftgatvraacdwagikqefgipynpqsqgvvesmnkelkkiigqvrdqaehlktav
qmavfihnkkrkggiggysagerivdiiatdi

Sequence, based on observed residues (ATOM records):

>d6ex9a_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktihtd
ngsnftgatvraacdwagikqefqgvvesmnkelkkiigqvrdqaehlktavqmavfihn
kkrkgysagerivdiiatdi

Timeline for d6ex9a_:

• d6ex9a_ is new in SCOPe 2.07-stable
  
• d6ex9a_ appears in the current release, SCOPe 2.08