SCOPe 2.08: Domain d5vjfb_: 5vjf B:

Lineage for d5vjfb_ (5vjf B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.0: automated matches [191319] (1 protein)
   not a true family

6. Protein automated matches [190115] (94 species)
   not a true protein

7. Species Helicobacter pylori [TaxId:85962] [312431] (15 PDB entries)

8. Domain d5vjfb_: 5vjf B: [351083]
   automated match to d3c4ua_
   complexed with 13p, ca, gol, na, zn

Details for d5vjfb_

PDB Entry: 5vjf, 1.85 Å

PDB Description: class ii fructose-1,6-bisphosphate aldolase of helicobacter pylori with dhap

PDB Compounds: (B:) Fructose-bisphosphate aldolase

SCOPe Domain Sequences for d5vjfb_:

Sequence, based on SEQRES records:

>d5vjfb_ c.1.10.0 (B:) automated matches {Helicobacter pylori [TaxId: 85962]}
mlvkgneillkahkegygvgafnfvnfemlnaifeagneensplfiqasegaikymgidm
avgmvkimceryphipvalhldhgttfescekavkagftsvmidashhafeenleltskv
vkmahnagvsveaelgrlmgiednisvdekdavlvnpkeaeqfvkesqvdylapaigtsh
gafkfkgepkldferlqevkrltniplvlhgasaipdnvrksyldaggdlkgskgvpfef
lqesvkgginkvntdtdlriafiaevrkvanedksqfdlrkffspaqlalknvvkermkl
lgsanki

Sequence, based on observed residues (ATOM records):

>d5vjfb_ c.1.10.0 (B:) automated matches {Helicobacter pylori [TaxId: 85962]}
mlvkgneillkahkegygvgafnfvnfemlnaifeagneensplfiqasegaikymgidm
avgmvkimceryphipvalhldhgttfescekavkagftsvmidashhafeenleltskv
vkmahnagvsveaelgrlmvlvnpkeaeqfvkesqvdylapaigtshgafkfkgepkldf
erlqevkrltniplvlhgasaipdnvrksyldaggdlkgskgvpfeflqesvkgginkvn
tdtdlriafiaevrkvanedksqfdlrkffspaqlalknvvkermkllgsanki

Timeline for d5vjfb_:

• d5vjfb_ first appeared in SCOPe 2.07