SCOPe 2.08: Domain d3uaga3: 3uag A:94-297

Lineage for d3uaga3 (3uag A:94-297)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families)
   has extra strand located between strands 1 and 2

5. Family c.72.2.1: MurCDEF [53624] (5 proteins)
   automatically mapped to Pfam PF08245

6. Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53625] (1 species)

7. Species Escherichia coli [TaxId:562] [53626] (7 PDB entries)

8. Domain d3uaga3: 3uag A:94-297 [34956]
   Other proteins in same PDB: d3uaga1, d3uaga2
   complexed with adp, epe, mn, uma

Details for d3uaga3

PDB Entry: 3uag, 1.77 Å

PDB Description: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase

PDB Compounds: (A:) protein (udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase)

SCOPe Domain Sequences for d3uaga3:

Sequence, based on SEQRES records:

>d3uaga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
dielfcreaqapivaitgsngkstvttlvgemakaagvnvgvggniglpalmllddecel
yvlelssfqlettsslqavaatilnvtedhmdrypfglqqyraaklriyenakvcvvnad
daltmpirgadercvsfgvnmgdyhlnhqqgetwlrvkgekvlnvkemklsgqhnytnal
aalaladaaglprasslkalttft

Sequence, based on observed residues (ATOM records):

>d3uaga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
dielfcreaqapivaitgsngkstvttlvgemakaagvnvgvggniglpalmllddecel
yvlelssfqlettsslqavaatilnvtedhmdrypfglqqyraaklriyenakvcvvnad
daltmpiercvsfgvnmgdyhlnhetwlrvkgekvlnvkemklsgqhnytnalaalalad
aaglprasslkalttft

Timeline for d3uaga3:

• d3uaga3 first appeared (with stable ids) in SCOP 1.55
  
• d3uaga3 appears in SCOPe 2.07