SCOPe 2.05: Domain d1rkda_: 1rkd A:

Lineage for d1rkda_ (1rkd A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.1: Ribokinase-like [53613] (6 families)
   has extra strand located between strands 2 and 3

5. Family c.72.1.1: Ribokinase-like [53614] (10 proteins)
   automatically mapped to Pfam PF00294

6. Protein Ribokinase [53615] (3 species)

7. Species Escherichia coli [TaxId:562] [53616] (5 PDB entries)

8. Domain d1rkda_: 1rkd A: [34928]
   complexed with adp, po4, rib

Details for d1rkda_

PDB Entry: 1rkd, 1.84 Å

PDB Description: e. coli ribokinase complexed with ribose and adp

PDB Compounds: (A:) ribokinase

SCOPe Domain Sequences for d1rkda_:

Sequence; same for both SEQRES and ATOM records:

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
agslvvlgsinadhilnlqsfptpgetvtgnhyqvafggkganqavaagrsganiafiac
tgddsigesvrqqlatdniditpvsvikgestgvalifvngegenvigihaganaalspa
lveaqrerianasallmqlesplesvmaaakiahqnktivalnpaparelpdellalvdi
itpneteaekltgirvendedaakaaqvlhekgirtvlitlgsrgvwasvngegqrvpgf
rvqavdtiaagdtfngalitalleekplpeairfahaaaaiavtrkgaqpsvpwreeida
fldrqr

Timeline for d1rkda_:

• d1rkda_ first appeared (with stable ids) in SCOP 1.55, called d1rkd__
  
• d1rkda_ appears in SCOPe 2.04
  
• d1rkda_ appears in SCOPe 2.06
  
• d1rkda_ appears in the current release, SCOPe 2.08