SCOPe 2.07: Domain d5wkma1: 5wkm A:1-304

Lineage for d5wkma1 (5wkm A:1-304)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
   barrel, closed; n=6, S=8; greek-key
   duplication: consists of two domains of the same fold

4. Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families)

5. Family b.47.1.0: automated matches [191364] (1 protein)
   not a true family

6. Protein automated matches [190438] (33 species)
   not a true protein

7. Species Middle east respiratory syndrome coronavirus [TaxId:1335626] [272740] (14 PDB entries)

8. Domain d5wkma1: 5wkm A:1-304 [348323]
   Other proteins in same PDB: d5wkma2
   automated match to d4wmea_
   complexed with b6y, n02

Details for d5wkma1

PDB Entry: 5wkm, 2.25 Å

PDB Description: 2.25 a resolution structure of mers 3cl protease in complex with piperidine-based peptidomimetic inhibitor 21

PDB Compounds: (A:) Orf1a protein

SCOPe Domain Sequences for d5wkma1:

Sequence, based on SEQRES records:

>d5wkma1 b.47.1.0 (A:1-304) automated matches {Middle east respiratory syndrome coronavirus [TaxId: 1335626]}
sglvkmshpsgdveacmvqvtcgsmtlnglwldntvwcprhvmcpadqlsdpnydallis
mtnhsfsvqkhigapanlrvvghamqgtllkltvdvanpstpaytfttvkpgaafsvlac
yngrptgtftvvmrpnytikgsflcgscgsvgytkegsvinfcymhqmelangthtgsaf
dgtmygafmdkqvhqvqltdkycsvnvvawlyaailngcawfvkpnrtsvvsfnewalan
qftefvgtqsvdmlavktgvaieqllyaiqqlytgfqgkqilgstmledeftpedvnmqi
mgvv

Sequence, based on observed residues (ATOM records):

>d5wkma1 b.47.1.0 (A:1-304) automated matches {Middle east respiratory syndrome coronavirus [TaxId: 1335626]}
sglvkmshpsgdveacmvqvtcgsmtlnglwldntvwcprhvmcpqlsdpnydallismt
nhsfsvqkhianlrvvghamqgtllkltvdvanpstpaytfttvkpgaafsvlacyngrp
tgtftvvmrpnytikgsflcgscgsvgytkegsvinfcymhqmelangthtgsafdgtmy
gafmdkqvhqvqltdkycsvnvvawlyaailngcawfvkpnrtsvvsfnewalanqftef
vgtqsvdmlavktgvaieqllyaiqqlytgfqgkqilgstmledeftpedvnmqimgvv

Timeline for d5wkma1:

• d5wkma1 is new in SCOPe 2.07-stable
  
• d5wkma1 appears in the current release, SCOPe 2.08