Lineage for d5vcja2 (5vcj A:186-279)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2355236Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2355237Protein automated matches [190740] (29 species)
    not a true protein
  7. 2357727Species Mouse (Mus musculus) [TaxId:10090] [188198] (822 PDB entries)
  8. 3048047Domain d5vcja2: 5vcj A:186-279 [348109]
    Other proteins in same PDB: d5vcja1, d5vcjb_, d5vcjc2
    automated match to d1zt4c1
    complexed with bma, fuc, man, nag, pbs, plm

Details for d5vcja2

PDB Entry: 5vcj (more details), 3.16 Å

PDB Description: structure of alpha-galactosylphytosphingosine bound by cd1d and in complex with the va14vb8.2 tcr
PDB Compounds: (A:) Antigen-presenting glycoprotein CD1d1

SCOPe Domain Sequences for d5vcja2:

Sequence, based on SEQRES records: (download)

>d5vcja2 b.1.1.0 (A:186-279) automated matches {Mouse (Mus musculus) [TaxId: 10090]}

Sequence, based on observed residues (ATOM records): (download)

>d5vcja2 b.1.1.0 (A:186-279) automated matches {Mouse (Mus musculus) [TaxId: 10090]}

SCOPe Domain Coordinates for d5vcja2:

Click to download the PDB-style file with coordinates for d5vcja2.
(The format of our PDB-style files is described here.)

Timeline for d5vcja2:

  • d5vcja2 is new in SCOPe 2.07-stable