Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2392350Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2394036Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families) (S)
  5. 2394037Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (2 proteins)
  6. 2394057Protein automated matches [347599] (2 species)
    not a true protein

Species:

  1. 2394058Human immunodeficiency virus 1 [TaxId:11676] [347600] (4 PDB entries)
    1. Domains for 5tc2:
      1. 2394063Domain d5tc2a_: 5tc2 A: [347601]
        automated match to d1c6vx_
        complexed with gol
      2. 2394064Domain d5tc2b_: 5tc2 B: [347682]
        automated match to d1c6vx_
        complexed with gol
    2. Domain for 6t6e:
    3. Domain for 6t6i:
    4. Domains for 6t6j:
      1. 2394060Domain d6t6ja1: 6t6j A:219-270 [391834]
        Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
        automated match to d1c6vx_
        complexed with ni; mutant
      2. 2394061Domain d6t6jb1: 6t6j B:219-270 [391820]
        Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
        automated match to d1c6vx_
        complexed with ni; mutant
      3. 2394062Domain d6t6jc1: 6t6j C:219-270 [391837]
        Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
        automated match to d1c6vx_
        complexed with ni; mutant
  2. 2394066Simian immunodeficiency virus [TaxId:11723] [380156] (3 PDB entries)
    1. Domains for 6rwm:
      1. 2394067Domain d6rwmd2: 6rwm D:223-272 [380199]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      2. 2394068Domain d6rwmf1: 6rwm F:223-271 [380224]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      3. 2394069Domain d6rwml2: 6rwm L:223-272 [380239]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      4. 2394070Domain d6rwmn1: 6rwm N:223-271 [380190]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
    2. Domains for 6rwn:
      1. 2394075Domain d6rwnd2: 6rwn D:223-272 [380197]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
      2. 2394076Domain d6rwnf1: 6rwn F:223-271 [380236]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
      3. 2394077Domain d6rwnl2: 6rwn L:223-272 [380221]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
      4. 2394078Domain d6rwnn1: 6rwn N:223-271 [380214]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
    3. Domains for 6rwo:
      1. 2394071Domain d6rwod2: 6rwo D:223-272 [380178]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      2. 2394072Domain d6rwof1: 6rwo F:223-271 [380164]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      3. 2394073Domain d6rwol2: 6rwo L:223-272 [380235]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      4. 2394074Domain d6rwon1: 6rwo N:223-271 [380157]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn

More info for Protein automated matches from b.34.7.1: DNA-binding domain of retroviral integrase

Timeline for Protein automated matches from b.34.7.1: DNA-binding domain of retroviral integrase:

  • Protein automated matches from b.34.7.1: DNA-binding domain of retroviral integrase is new in SCOPe 2.07-stable
  • Protein automated matches from b.34.7.1: DNA-binding domain of retroviral integrase does not appear in SCOPe 2.08