SCOPe 2.07: Domain d5or7a_: 5or7 A:

Lineage for d5or7a_ (5or7 A:)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (22 species)
   not a true protein

7. Species Murine norovirus gv/cr10/2005/usa [TaxId:463724] [347267] (1 PDB entry)

8. Domain d5or7a_: 5or7 A: [347268]
   Other proteins in same PDB: d5or7c_
   automated match to d1ihmb_
   complexed with na

Details for d5or7a_

PDB Entry: 5or7, 2.05 Å

PDB Description: atomic structure of the murine norovirus protruding domain and scd300lf receptor complex

PDB Compounds: (A:) capsid protein

SCOPe Domain Sequences for d5or7a_:

Sequence, based on SEQRES records:

>d5or7a_ b.121.4.0 (A:) automated matches {Murine norovirus gv/cr10/2005/usa [TaxId: 463724]}
rmvdlpvlqprlctharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvs
cfaaeaayefqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnvdqapyqgrvyasltavasldlvdgrvravprsiygfqdvipe
yndgllvplappigpflpgevllrfrtymrqldtadaaaeaidcalpqefiswfasnaft
vqsdalllryrntltgqllfecklysegyialsysgsgpltfptdgffevvswvprlfql
asv

Sequence, based on observed residues (ATOM records):

>d5or7a_ b.121.4.0 (A:) automated matches {Murine norovirus gv/cr10/2005/usa [TaxId: 463724]}
rmvdlpvlqprlctharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvs
cfaaeaayefqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettkkl
kvttfemilgpttnvdqapyqgrvyasltavasldlvdgrvravprsiygfqdvipeynd
gllvplappigpflpgevllrfrtymrqldaaaeaidcalpqefiswfasnaftvqsdal
llryrntltgqllfecklysegyialsysgsgpltfptdgffevvswvprlfqlasv

Timeline for d5or7a_:

• d5or7a_ is new in SCOPe 2.07-stable
  
• d5or7a_ appears in the current release, SCOPe 2.08