Class b: All beta proteins [48724] (178 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families) duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits trimeric; in the trimers, the domains are arranged around pseudo six-fold axis |
Family b.121.2.2: Adenovirus hexon [49753] (2 proteins) each domain is heavily decorated with many insertions |
Protein automated matches [336628] (2 species) not a true protein |
Species Human adenovirus c serotype 5 [TaxId:28285] [347256] (1 PDB entry) |
Domain d5ogia1: 5ogi A:6-634 [347257] Other proteins in same PDB: d5ogia2, d5ogib1, d5ogib2, d5ogib3 automated match to d1p2za1 complexed with dio, edo, mes, so4 |
PDB Entry: 5ogi (more details), 2.8 Å
SCOPe Domain Sequences for d5ogia1:
Sequence, based on SEQRES records: (download)
>d5ogia1 b.121.2.2 (A:6-634) automated matches {Human adenovirus c serotype 5 [TaxId: 28285]} mpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrltl rfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynalap kgapnpcewdeaataleinleeedddnedevdeqaeqqkthvfgqapysginitkegiqi gvegqtpkyadktfqpepqigesqwyeteinhaagrvlkkttpmkpcygsyakptnengg qgilvkqqngklesqvemqffstteaaagngdnltpkvvlysedvdietpdthisympti kegnsrelmgqqsmpnrpnyiafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrnt elsyqllldsigdrtryfsmwnqavdsydpdvriienhgtedelpnycfplggvgnnsty tkvkpktgqengwekdatefsdkneirvgnnfameinlnanlwrnflysnialylpdklk yspsnvkisdnpntydymnkrvvapglvdcyinlgarwsldymdnvnpfnhhrnaglryr smllgngryvpfhiqvpqkffaiknllllpgsytyewnfrkdvnmvlqsslgndlrvdga sikfdsiclyatffpmahntastleamlr
>d5ogia1 b.121.2.2 (A:6-634) automated matches {Human adenovirus c serotype 5 [TaxId: 28285]} mpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrltl rfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynalap kgapnpcewdeaataeqqkthvfgqapysginitkegiqigvegqtpkyadktfqpepqi gesqwyeteinhaagrvlkkttpmkpcygsyakptnenggqgilvkqqngklesqvemqf fstteaaagngdnltpkvvlysedvdietpdthisymptikegnsrelmgqqsmpnrpny iafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrntelsyqllldsigdrtryfsm wnqavdsydpdvriienhgtedelpnycfplggvgnnstytkvkpktgqengwekdatef sdkneirvgnnfameinlnanlwrnflysnialylpdklkyspsnvkisdnpntydymnk rvvapglvdcyinlgarwsldymdnvnpfnhhrnaglryrsmllgngryvpfhiqvpqkf faiknllllpgsytyewnfrkdvnmvlqsslgndlrvdgasikfdsiclyatffpmahnt astleamlr
Timeline for d5ogia1: