SCOPe 2.08: Domain d5ogia1: 5ogi A:6-634

Lineage for d5ogia1 (5ogi A:6-634)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families)
   duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
   trimeric; in the trimers, the domains are arranged around pseudo six-fold axis

5. Family b.121.2.2: Adenovirus hexon [49753] (3 proteins)
   each domain is heavily decorated with many insertions

6. Protein automated matches [336628] (2 species)
   not a true protein

7. Species Human adenovirus c serotype 5 [TaxId:28285] [347256] (1 PDB entry)

8. Domain d5ogia1: 5ogi A:6-634 [347257]
   Other proteins in same PDB: d5ogia2, d5ogib1, d5ogib2, d5ogib3
   automated match to d1p2za1
   complexed with dio, edo, mes, so4

Details for d5ogia1

PDB Entry: 5ogi, 2.8 Å

PDB Description: complex of a binding protein and human adenovirus c 5 hexon

PDB Compounds: (A:) hexon protein

SCOPe Domain Sequences for d5ogia1:

Sequence, based on SEQRES records:

>d5ogia1 b.121.2.2 (A:6-634) automated matches {Human adenovirus c serotype 5 [TaxId: 28285]}
mpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrltl
rfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynalap
kgapnpcewdeaataleinleeedddnedevdeqaeqqkthvfgqapysginitkegiqi
gvegqtpkyadktfqpepqigesqwyeteinhaagrvlkkttpmkpcygsyakptnengg
qgilvkqqngklesqvemqffstteaaagngdnltpkvvlysedvdietpdthisympti
kegnsrelmgqqsmpnrpnyiafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrnt
elsyqllldsigdrtryfsmwnqavdsydpdvriienhgtedelpnycfplggvgnnsty
tkvkpktgqengwekdatefsdkneirvgnnfameinlnanlwrnflysnialylpdklk
yspsnvkisdnpntydymnkrvvapglvdcyinlgarwsldymdnvnpfnhhrnaglryr
smllgngryvpfhiqvpqkffaiknllllpgsytyewnfrkdvnmvlqsslgndlrvdga
sikfdsiclyatffpmahntastleamlr

Sequence, based on observed residues (ATOM records):

>d5ogia1 b.121.2.2 (A:6-634) automated matches {Human adenovirus c serotype 5 [TaxId: 28285]}
mpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrltl
rfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynalap
kgapnpcewdeaataeqqkthvfgqapysginitkegiqigvegqtpkyadktfqpepqi
gesqwyeteinhaagrvlkkttpmkpcygsyakptnenggqgilvkqqngklesqvemqf
fstteaaagngdnltpkvvlysedvdietpdthisymptikegnsrelmgqqsmpnrpny
iafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrntelsyqllldsigdrtryfsm
wnqavdsydpdvriienhgtedelpnycfplggvgnnstytkvkpktgqengwekdatef
sdkneirvgnnfameinlnanlwrnflysnialylpdklkyspsnvkisdnpntydymnk
rvvapglvdcyinlgarwsldymdnvnpfnhhrnaglryrsmllgngryvpfhiqvpqkf
faiknllllpgsytyewnfrkdvnmvlqsslgndlrvdgasikfdsiclyatffpmahnt
astleamlr

Timeline for d5ogia1:

• d5ogia1 first appeared in SCOPe 2.07