SCOPe 2.07: Domain d5n9zd2: 5n9z D:154-484

Lineage for d5n9zd2 (5n9z D:154-484)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein automated matches [226984] (16 species)
   not a true protein

7. Species Thalassiosira hyalina [TaxId:1234817] [346766] (1 PDB entry)

8. Domain d5n9zd2: 5n9z D:154-484 [346897]
   Other proteins in same PDB: d5n9za1, d5n9zb1, d5n9zc1, d5n9zd1, d5n9ze1, d5n9zf1, d5n9zg1, d5n9zh1, d5n9zi_, d5n9zj_, d5n9zk_, d5n9zl_, d5n9zm_, d5n9zn_, d5n9zo_, d5n9zp_
   automated match to d1bwva1
   complexed with cap, edo, mg

Details for d5n9zd2

PDB Entry: 5n9z, 1.9 Å

PDB Description: rubisco from thalassiosira hyalina

PDB Compounds: (D:) ribulose bisphosphate carboxylase large chain

SCOPe Domain Sequences for d5n9zd2:

Sequence; same for both SEQRES and ATOM records:

>d5n9zd2 c.1.14.1 (D:154-484) automated matches {Thalassiosira hyalina [TaxId: 1234817]}
gpatgiivererlnkygtpllgatvkpklglsgknygrvvyeglxggldflkddeninsq
pfmrwrerflncleginraaaatgevkgsylnitaatmeevykraeyakaigsvvvmidl
vmgytaiqsiaywarendmllhlhragnstyarqknhginfrvickwmrmsgvdhihagt
vvgklegdplmikgfydvlrltelevnlpfgiffemdwaslrrcmpvasggihcgqmhql
ihylgddvvlqfgggtighpdgiqagatanrvaleamvlarnegadyfnnqvgpqilrda
aktcgplqtaldlwkdisfnytstdtadfae

Timeline for d5n9zd2:

• d5n9zd2 is new in SCOPe 2.07-stable
  
• d5n9zd2 appears in the current release, SCOPe 2.08