SCOPe 2.07: Domain d5n5vd1: 5n5v D:1-306

Lineage for d5n5vd1 (5n5v D:1-306)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (10 species)
   not a true protein

7. Species Methanocaldococcus jannaschii [TaxId:243232] [193079] (20 PDB entries)

8. Domain d5n5vd1: 5n5v D:1-306 [346772]
   Other proteins in same PDB: d5n5va2, d5n5vb2, d5n5vd2, d5n5ve2, d5n5vf2, d5n5vg2, d5n5vh2
   automated match to d1u7xa_
   complexed with cl

Details for d5n5vd1

PDB Entry: 5n5v, 2.3 Å

PDB Description: structure of p-boronophenylalanyl trna synthetase - apo form

PDB Compounds: (D:) Tyrosine--tRNA ligase

SCOPe Domain Sequences for d5n5vd1:

Sequence; same for both SEQRES and ATOM records:

>d5n5vd1 c.26.1.1 (D:1-306) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
mdefelikrntseiiseeelrevlkkdeksasigfepsgkihlghylqikkmidlqnagf
diiialadlmaylnqkgeldeirkigdynkkvfeamglkakyvygsefqldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnsihyegvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmrlknavaeelikile
pirkrl

Timeline for d5n5vd1:

• d5n5vd1 is new in SCOPe 2.07-stable
  
• d5n5vd1 appears in the current release, SCOPe 2.08