SCOPe 2.07: Domain d5mz2e2: 5mz2 E:154-484

Lineage for d5mz2e2 (5mz2 E:154-484)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein automated matches [226984] (16 species)
   not a true protein

7. Species Thalassiosira antarctica [TaxId:555753] [346600] (1 PDB entry)

8. Domain d5mz2e2: 5mz2 E:154-484 [346759]
   Other proteins in same PDB: d5mz2a1, d5mz2b1, d5mz2c1, d5mz2d1, d5mz2e1, d5mz2f1, d5mz2g1, d5mz2h1, d5mz2i_, d5mz2j_, d5mz2k_, d5mz2l_, d5mz2m_, d5mz2n_, d5mz2o_, d5mz2p_
   automated match to d1bwva1
   complexed with cap, edo, mg

Details for d5mz2e2

PDB Entry: 5mz2, 1.9 Å

PDB Description: rubisco from thalassiosira antarctica

PDB Compounds: (E:) Rubisco large subunit

SCOPe Domain Sequences for d5mz2e2:

Sequence; same for both SEQRES and ATOM records:

>d5mz2e2 c.1.14.1 (E:154-484) automated matches {Thalassiosira antarctica [TaxId: 555753]}
gpatgiivererlnkygtpllgatvkpklglsgknygrvvyeglxggldflkddeninsq
pfmrwrerflncleginraaaatgevkgsylnitaatmeevykraeyakaigsvvvmidl
vmgytaiqsiaywarendmllhlhragnstyarqknhginfrvickwmrmsgvdhihagt
vvgklegdplmikgfydilrltelevnlpfgiffemdwaslrrcmpvasggihcgqmhql
ihylgddvvlqfgggtighpdgiqagatanrvaleamvlarnegadyfnnqvgpqilrda
aktcgplqtaldlwkdisfnytstdtadfae

Timeline for d5mz2e2:

• d5mz2e2 is new in SCOPe 2.07-stable
  
• d5mz2e2 appears in the current release, SCOPe 2.08