Lineage for d5mz2c2 (5mz2 C:154-483)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2424105Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families) (S)
    automatically mapped to Pfam PF00016
  5. 2424106Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
    N-terminal domain is alpha+beta
  6. 2424311Protein automated matches [226984] (14 species)
    not a true protein
  7. 3046538Species Thalassiosira antarctica [TaxId:555753] [346600] (1 PDB entry)
  8. 3046555Domain d5mz2c2: 5mz2 C:154-483 [346617]
    Other proteins in same PDB: d5mz2a1, d5mz2b1, d5mz2c1, d5mz2d1, d5mz2e1, d5mz2f1, d5mz2g1, d5mz2h1, d5mz2i_, d5mz2j_, d5mz2k_, d5mz2l_, d5mz2m_, d5mz2n_, d5mz2o_, d5mz2p_
    automated match to d1bwva1
    complexed with cap, edo, mg

Details for d5mz2c2

PDB Entry: 5mz2 (more details), 1.9 Å

PDB Description: rubisco from thalassiosira antarctica
PDB Compounds: (C:) Rubisco large subunit

SCOPe Domain Sequences for d5mz2c2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5mz2c2 c.1.14.1 (C:154-483) automated matches {Thalassiosira antarctica [TaxId: 555753]}
gpatgiivererlnkygtpllgatvkpklglsgknygrvvyeglxggldflkddeninsq
pfmrwrerflncleginraaaatgevkgsylnitaatmeevykraeyakaigsvvvmidl
vmgytaiqsiaywarendmllhlhragnstyarqknhginfrvickwmrmsgvdhihagt
vvgklegdplmikgfydilrltelevnlpfgiffemdwaslrrcmpvasggihcgqmhql
ihylgddvvlqfgggtighpdgiqagatanrvaleamvlarnegadyfnnqvgpqilrda
aktcgplqtaldlwkdisfnytstdtadfa

SCOPe Domain Coordinates for d5mz2c2:

Click to download the PDB-style file with coordinates for d5mz2c2.
(The format of our PDB-style files is described here.)

Timeline for d5mz2c2:

  • d5mz2c2 appears in periodic updates to SCOPe 2.07 starting on 2018-04-06