Lineage for Protein: RNA polymerase I subunit A34.5, interaction domain

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2807206Fold b.65: triple barrel [50915] (1 superfamily)
    dimer of two non-identical subunits; forms two similar barrels, n=8, S=10 each, that are fused together with the formation of third barrel, n=6, S=8
  4. 2807207Superfamily b.65.1: Rap30/74 interaction domain-like [50916] (3 families) (S)
  5. 2807221Family b.65.1.2: RNA polymerase I A49/34.5, interaction domains [345965] (3 proteins)
    Homology with TFIIF discussed in PubMed 20797630
  6. 2807222Protein RNA polymerase I subunit A34.5, interaction domain [346057] (2 species)
    N-terminal part of Pfam PF08208
    Extended C-terminal part of this domain disordered in some structures

Species:

  1. 2807223Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346250] (2 PDB entries)
    1. Domains for 4c2m:
      1. 2807224Domain d4c2m3_: 4c2m 3: [343918]
        Other proteins in same PDB: d4c2m1_, d4c2m2_, d4c2ma_, d4c2mb_, d4c2mc1, d4c2mc2, d4c2me1, d4c2me2, d4c2mf_, d4c2mg1, d4c2mh_, d4c2mi1, d4c2mi2, d4c2mj_, d4c2mk_, d4c2ml_, d4c2mm_, d4c2mp_, d4c2mq_, d4c2mr1, d4c2mr2, d4c2mt1, d4c2mt2, d4c2mu_, d4c2mv1, d4c2mw_, d4c2mx1, d4c2mx2, d4c2my_, d4c2mz_
        automated match to d4c3hn_
        complexed with so4, zn
      2. 2807225Domain d4c2mn_: 4c2m N: [343927]
        Other proteins in same PDB: d4c2m1_, d4c2m2_, d4c2ma_, d4c2mb_, d4c2mc1, d4c2mc2, d4c2me1, d4c2me2, d4c2mf_, d4c2mg1, d4c2mh_, d4c2mi1, d4c2mi2, d4c2mj_, d4c2mk_, d4c2ml_, d4c2mm_, d4c2mp_, d4c2mq_, d4c2mr1, d4c2mr2, d4c2mt1, d4c2mt2, d4c2mu_, d4c2mv1, d4c2mw_, d4c2mx1, d4c2mx2, d4c2my_, d4c2mz_
        automated match to d4c3hn_
        complexed with so4, zn
    2. Domain for 4c3h:
  2. 2807227Candida glabrata [TaxId:5478] [346251] (2 PDB entries)
    1. Domains for 3nff:
      1. 2807236Domain d3nffb_: 3nff B: [344922]
        Other proteins in same PDB: d3nffa_, d3nffc_, d3nffe_, d3nffg_
        protein/RNA complex
      2. 2807237Domain d3nffd_: 3nff D: [344924]
        Other proteins in same PDB: d3nffa_, d3nffc_, d3nffe_, d3nffg_
        protein/RNA complex
      3. 2807238Domain d3nfff_: 3nff F: [344926]
        Other proteins in same PDB: d3nffa_, d3nffc_, d3nffe_, d3nffg_
        protein/RNA complex
      4. 2807239Domain d3nffh_: 3nff H: [344928]
        Other proteins in same PDB: d3nffa_, d3nffc_, d3nffe_, d3nffg_
        protein/RNA complex
    2. Domains for 3nfg:
      1. 2807228Domain d3nfgb1: 3nfg B:25-143 [344930]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex
      2. 2807229Domain d3nfgd1: 3nfg D:25-143 [344933]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex
      3. 2807230Domain d3nfgf1: 3nfg F:25-143 [344936]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex
      4. 2807231Domain d3nfgh1: 3nfg H:25-143 [344939]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex
      5. 2807232Domain d3nfgj1: 3nfg J:25-143 [344942]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex
      6. 2807233Domain d3nfgl1: 3nfg L:25-143 [344945]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex
      7. 2807234Domain d3nfgn1: 3nfg N:25-143 [344948]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex
      8. 2807235Domain d3nfgp_: 3nfg P: [344951]
        Other proteins in same PDB: d3nfga_, d3nfgb2, d3nfgc_, d3nfgd2, d3nfge_, d3nfgf2, d3nfgg_, d3nfgh2, d3nfgi_, d3nfgj2, d3nfgk_, d3nfgl2, d3nfgm_, d3nfgn2, d3nfgo_
        automated match to d3nffh_
        protein/RNA complex

More info for Protein RNA polymerase I subunit A34.5, interaction domain from b.65.1.2: RNA polymerase I A49/34.5, interaction domains

Timeline for Protein RNA polymerase I subunit A34.5, interaction domain from b.65.1.2: RNA polymerase I A49/34.5, interaction domains:

  • Protein RNA polymerase I subunit A34.5, interaction domain from b.65.1.2: RNA polymerase I A49/34.5, interaction domains first appeared in SCOPe 2.07