Lineage for d5o9zi_ (5o9z I:)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2332674Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2334647Superfamily a.118.30: Pre-mRNA splicing factor Prp38 N-terminal-like [345917] (1 family) (S)
    Pfam PF03371
    Structural similarity to HEAT repeats, according to PubMed 26673105
    Some loops between helices form beta hairpins
  5. 2334648Family a.118.30.1: Pre-mRNA splicing factor Prp38-like [345958] (1 protein)
  6. 2334649Protein Pre-mRNA splicing factor Prp38A [346044] (2 species)
  7. 2334658Species Human (Homo sapiens) [TaxId:9606] [346208] (4 PDB entries)
  8. 2334662Domain d5o9zi_: 5o9z I: [345816]
    Other proteins in same PDB: d5o9ze1, d5o9ze2, d5o9zg_, d5o9zh1, d5o9zh2, d5o9zk_, d5o9zp_, d5o9zv_, d5o9zx_, d5o9zy_
    protein/RNA complex

Details for d5o9zi_

PDB Entry: 5o9z (more details)

PDB Description: cryo-em structure of a pre-catalytic human spliceosome primed for activation (b complex)
PDB Compounds: (I:) Pre-mRNA-splicing factor 38A

SCOPe Domain Sequences for d5o9zi_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5o9zi_ a.118.30.1 (I:) Pre-mRNA splicing factor Prp38A {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d5o9zi_:

Click to download the PDB-style file with coordinates for d5o9zi_.
(The format of our PDB-style files is described here.)

Timeline for d5o9zi_:

  • d5o9zi_ is new in SCOPe 2.07-stable