SCOPe 2.08: Domain d5gmkv_: 5gmk v:

Lineage for d5gmkv_ (5gmk v:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.8: TPR-like [48452] (11 families)

5. Family a.118.8.7: HAT/Suf repeat [158782] (4 proteins)
   includes Pfam PF05843
   Pfam PF02184
   this is a repeat family; one repeat unit is 2ond A:372-408 found in domain

6. Protein Pre-mRNA splicing factor Cwf3 / Syf1 [346029] (1 species)
   3jb9 chain r is Cwf3 from fission yeast; not included because sids are not case sensitive
7. Species Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292] [346191] (1 PDB entry)

8. Domain d5gmkv_: 5gmk v: [345647]
   Other proteins in same PDB: d5gmka_, d5gmkb_, d5gmkd_, d5gmkf_, d5gmkg_, d5gmkh_, d5gmki_, d5gmkn1, d5gmkn2
   protein/RNA complex; complexed with gtp, mg, zn
   applies to all domains of a family if the common domain is composed of a different number of small repeating units

Details for d5gmkv_

PDB Entry: 5gmk, 3.4 Å

PDB Description: cryo-em structure of the catalytic step i spliceosome (c complex) at 3.4 angstrom resolution

PDB Compounds: (v:) Pre-mRNA-splicing factor SYF1

SCOPe Domain Sequences for d5gmkv_:

Sequence, based on SEQRES records:

>d5gmkv_ a.118.8.7 (v:) Pre-mRNA splicing factor Cwf3 / Syf1 {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
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xxxxxxxxxxxxxxxxxxxxxxxktkmayntvidlrlitpamaenfalflqnhyevmesf
qvyektiplfppeiqyelwieylevatshqlsslspehirflfekalknlcsngidckti
fiaysvfeerisglisksieilrrgavigtvsvsthlesrlqlwrmciskaestlgpsvt
relyqeciqxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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Sequence, based on observed residues (ATOM records):

>d5gmkv_ a.118.8.7 (v:) Pre-mRNA splicing factor Cwf3 / Syf1 {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
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xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxktkmayntvidltpama
enfalflqnhyevmesfqvyektiplfppeiqyelwieylevatshqlspehirflfeka
lkktifiaysvfeerilisksieilrrlqlwrmciskaestlgpsvtrelyqeciqxxxx
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Timeline for d5gmkv_:

• d5gmkv_ first appeared in SCOPe 2.07