Lineage for d5gmkn2 (5gmk n:51-73)

  1. Root: SCOPe 2.08
  2. 3045664Class j: Peptides [58231] (151 folds)
  3. 3047698Fold j.139: Pre-mRNA splicing factor Prp17-like [345903] (1 superfamily)
    Extended fragments made of helices and loops
  4. 3047699Superfamily j.139.1: Pre-mRNA splicing factor Prp17-like [345939] (1 family) (S)
  5. 3047700Family j.139.1.1: Pre-mRNA splicing factor Prp17-like [345997] (1 protein)
  6. 3047701Protein Pre-mRNA splicing factor Prp17, extended domain [346140] (2 species)
  7. 3047702Species Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292] [346456] (1 PDB entry)
  8. 3047703Domain d5gmkn2: 5gmk n:51-73 [345646]
    Other proteins in same PDB: d5gmka_, d5gmkb_, d5gmkd_, d5gmkf_, d5gmkg_, d5gmkh_, d5gmki_, d5gmkn1, d5gmkv_
    protein/RNA complex; complexed with gtp, mg, zn

Details for d5gmkn2

PDB Entry: 5gmk (more details), 3.4 Å

PDB Description: cryo-em structure of the catalytic step i spliceosome (c complex) at 3.4 angstrom resolution
PDB Compounds: (n:) Pre-mRNA-processing factor 17

SCOPe Domain Sequences for d5gmkn2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5gmkn2 j.139.1.1 (n:51-73) Pre-mRNA splicing factor Prp17, extended domain {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
ftkselkrrrktrkgdgpwgsws

SCOPe Domain Coordinates for d5gmkn2:

Click to download the PDB-style file with coordinates for d5gmkn2.
(The format of our PDB-style files is described here.)

Timeline for d5gmkn2:

3047703
d5gmkn2 in context of chain
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Domains from same chain:
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d5gmkn1