SCOPe 2.08: Domain d5gmkn1: 5gmk n:151-455

Lineage for d5gmkn1 (5gmk n:151-455)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.69: 7-bladed beta-propeller [50964] (15 superfamilies)
   consists of seven 4-stranded beta-sheet motifs; meander

4. Superfamily b.69.4: WD40 repeat-like [50978] (4 families)
   also contains 8-bladed propellers

5. Family b.69.4.1: WD40-repeat [50979] (17 proteins)
   this is a repeat family; one repeat unit is 1tyq C:201-243 found in domain

6. Protein Pre-mRNA splicing factor Prp17, WD40 domain [346062] (1 species)

7. Species Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292] [346259] (1 PDB entry)

8. Domain d5gmkn1: 5gmk n:151-455 [345645]
   Other proteins in same PDB: d5gmka_, d5gmkb_, d5gmkd_, d5gmkf_, d5gmkg_, d5gmkh_, d5gmki_, d5gmkn2, d5gmkv_
   protein/RNA complex; complexed with gtp, mg, zn

Details for d5gmkn1

PDB Entry: 5gmk, 3.4 Å

PDB Description: cryo-em structure of the catalytic step i spliceosome (c complex) at 3.4 angstrom resolution

PDB Compounds: (n:) Pre-mRNA-processing factor 17

SCOPe Domain Sequences for d5gmkn1:

Sequence, based on SEQRES records:

>d5gmkn1 b.69.4.1 (n:151-455) Pre-mRNA splicing factor Prp17, WD40 domain {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
pkkvirnypghpegttalkflpktghlilsggndhtikiwdfyhdyeclrdfqghnkpik
alrftedcqsflsssfdrsvkiwdtetgkvktrlhlnstpadvesrptnphefivglsns
kilhyddrvsenqglvqtydhhlssilalkyfpdgskfisssedktvriwenqinvpikq
isdtaqhsmpflnvhpsqnyfcaqsmdnriysfslkpkykrhpkkifkghssagygisla
fsgdgryicsgdsksrlftwdwntsrllnnikipgnkpitqvdwhpqetskvicsgaagk
iyvcd

Sequence, based on observed residues (ATOM records):

>d5gmkn1 b.69.4.1 (n:151-455) Pre-mRNA splicing factor Prp17, WD40 domain {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
pkkvirnypghpegttalkflpktghlilsggndhtikiwdfeclrdfqghnkpikalrf
tedcqsflsssfdrsvkiwdtetgkvktrlhlnstpadvesrptnphefivglsnskilh
yddvqtydhhlssilalkyfpdgskfisssedktvriwenqinvpikqisdtasmpflnv
hpnyfcaqsmdnriysfskykrhpkkihssagygislafsgdgryicsgdsksrlftwdw
ntsrllipgnkpitqvdwhpskvicsgaagkiyvcd

Timeline for d5gmkn1:

• d5gmkn1 first appeared in SCOPe 2.07